Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G003040`

染色体: Chr05 坐标: 38142178-38152346 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G003040`
名称	SmilChr05G003040
描述	uncharacterized SmilChr05G003040
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	38142178 - 38152346 / `-`

ID 对照

NCBI Gene ID	`LOC131024327`
GeneID	`131024327`
locus_tag	`-`
NCBI Name	`LOC131024327`
原始查询	`SmilChr05G003040`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	polyadenylate-binding protein interacting protein [Source:NCBI gene (formerly Entrezgene);Acc:835583]; symbol=AT5G54920; hit=AT5G54920; species=arabidopsis; confidence=medium
产物	polyadenylate-binding protein interacting protein [Source:NCBI gene (formerly Entrezgene);Acc:835583]; symbol=AT5G54920; hit=AT5G54920; species=arabidopsis; confidence=medium
Arabidopsis	`AT5G54920` (AT5G54920) polyadenylate-binding protein interacting protein [Source:NCBI gene (formerly Entrezgene);Acc:835583] identity=39.8; qcov=0.557; evalue=9.48e-36; confidence=medium
Rice	`Os04g0625900` - identity=26.7; qcov=0.975; evalue=1.64e-17; confidence=low
GO	GO:0003723 (RNA binding); GO:0010494 (cytoplasmic stress granule); GO:0034063 (stress granule assembly)
KEGG	-
Pfam	PF14438 (SM-ATX)
InterPro	-
eggNOG	-
NR	GeneID:131024327

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057809821.1`
2	Nucleus	细胞核	0.80000	`XP_057809822.1`
3	Cytoplasmic granule	细胞质颗粒	0.60000	`XP_057809821.1`
4	Cytoplasmic ribonucleoprotein granule	Cytoplasmic ribonucleoprotein granule	0.60000	`XP_057809821.1`
5	P-body	P-body	0.40000	`XP_057809821.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:38142665`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B94,B99
`Chr5:38143638`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A6
`Chr5:38149979`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B38,B39,B96
`Chr5:38150664`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B94,B99
`Chr5:38151212`	`TC`	`T`	1bp_deletion	frameshift_variant	1	C61
`Chr5:38151212`	`TC`	`T`	1bp_deletion	CDS_variant	1	C61
`Chr5:38151471`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B107,B31,C28

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057809821.1

557 aa

278

557

SM-ATX

PF14438 SM-ATX 24-102 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057809821.1`	Pfam	`PF14438`	SM-ATX	Domain	24	102	7.7e-24	84.4	Ataxin 2 SM domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057953838.1
AAAATGCCCGCAAAAAAGGTGGGCAAACATCGTTCTCTCTCGTACACTAGAAATCCAAATTCCAAATCAAAGAAAGCTACAGCTGCAACTATCAGATCTCCTCACTCCCTCCCTCCCTCTCTCCCACTTCATCAATCAAACTCACTCTCATTCATCACTAACTAATAGTAATTCCATTTCGATTTTATTACTGCCACACTAATTAATTCGATACTCTAGAATGGCCTGCAGAAAGGGGGAGTTAAGGGAGGATGGAAAAA...

XM_057953839.1
GGGCGAGGAATTATACTTGTTCTTCTGTTTCTTGATTGATATGTATGCAATTGTGTTGAAGAAAGCAAGGATGATCAAGAAGGGTAGCCTAGACGCCAATGTAGTTAATGGAACACTGATAGAGACGCTTATAGTTCAGTCGGAAGATCTTGTCCAAGTTGTTGCAAAGGCAGTTATACTTCCTTCTGATGGAATGACAGGATATGTAGGGGGGGATGACATGGAGGCTGCTAAAGGCTATAATACTGAATGCTCGGAAA...

CDS

3 records

下载 CDS FASTA

LOC131024327
ATGGCCTGCAGAAAGGGGGAGTTAAGGGAGGATGGAAAAATCAGAAATGACGCGGCGGCGGCACTCGGGGATGCCTTGCTGTTTACCACGATGTGCATCATTGGAATGGCCGTTGACGTCCACGCCAAAGATGGTTCTGTCTATTCTGGAATCTTCCACACCGCCTCCGTCGACAAGGACTATGCAATTGTGTTGAAGAAAGCAAGGATGATCAAGAAGGGTAGCCTAGACGCCAATGTAGTTAATGGAACACTGATAGA...

LOC131024327
ATGTATGCAATTGTGTTGAAGAAAGCAAGGATGATCAAGAAGGGTAGCCTAGACGCCAATGTAGTTAATGGAACACTGATAGAGACGCTTATAGTTCAGTCGGAAGATCTTGTCCAAGTTGTTGCAAAGGCAGTTATACTTCCTTCTGATGGAATGACAGGATATGTAGGGGGGGATGACATGGAGGCTGCTAAAGGCTATAATACTGAATGCTCGGAAAGGGATGCAGAAGTGGTAAAAACAAATGAGTCAAAAGGGAA...

Protein

3 records

下载 Protein FASTA

XP_057809821.1
MACRKGELREDGKIRNDAAAALGDALLFTTMCIIGMAVDVHAKDGSVYSGIFHTASVDKDYAIVLKKARMIKKGSLDANVVNGTLIETLIVQSEDLVQVVAKAVILPSDGMTGYVGGDDMEAAKGYNTECSERDAEVVKTNESKGNHEYSIQSRLSVERENDSSYNSTMRTANPLGSHLEDYREGSNARNAEKIQTEEADNVFDDGRHVGNGLQETQRDFRNPLKFQDKRTSGESQDSSLSITSYEAQSTSAVHVQEDFV...

XP_057809822.1
MYAIVLKKARMIKKGSLDANVVNGTLIETLIVQSEDLVQVVAKAVILPSDGMTGYVGGDDMEAAKGYNTECSERDAEVVKTNESKGNHEYSIQSRLSVERENDSSYNSTMRTANPLGSHLEDYREGSNARNAEKIQTEEADNVFDDGRHVGNGLQETQRDFRNPLKFQDKRTSGESQDSSLSITSYEAQSTSAVHVQEDFVRLELQEVSSGRSSTLEDQNQEKATTNVTASTVPFLPNNYVTSTHIINVKSESCLSASSN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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