Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G003142

染色体: Chr05 坐标: 40039819-40045227 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G003142
名称SmilChr05G003142
描述protein METABOLIC NETWORK MODULATOR 1-like
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向40039819 - 40045227 / -

ID 对照

NCBI Gene IDLOC131024403
GeneID131024403
locus_tag-
NCBI NameLOC131024403
原始查询SmilChr05G003142

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述protein METABOLIC NETWORK MODULATOR 1-like
产物protein METABOLIC NETWORK MODULATOR 1-like
ArabidopsisAT5G54930 (AT5G54930)
AT hook motif-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:835584]
identity=33.8; qcov=0.898; evalue=7.01e-31; confidence=low
Rice-
-
GO-
KEGG-
PfamPF27637 (MNM1_beta)
InterPro-
eggNOG-
NRGeneID:131024403

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057809886.1
2 Chromosome 染色体 0.00000 XP_057809886.1
3 Centromere 着丝粒 0.00000 XP_057809886.1
4 Chromatin 染色质 0.00000 XP_057809886.1
5 Telomere 端粒 0.00000 XP_057809886.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:40040331 G A EMS_canonical_SNV CDS_variant 3 A5,B4,C19
Chr5:40040679 G A EMS_canonical_SNV CDS_variant 4 B104,B13,B4,C19

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057809886.1
333 aa
N
1
166
333
MNM1_beta
C
PF27637 MNM1_beta 65-101 aa
XP_057809887.1
333 aa
N
1
166
333
MNM1_beta
C
PF27637 MNM1_beta 65-101 aa
XP_057809888.1
333 aa
N
1
166
333
MNM1_beta
C
PF27637 MNM1_beta 65-101 aa
XP_057809889.1
333 aa
N
1
166
333
MNM1_beta
C
PF27637 MNM1_beta 65-101 aa
XP_057809890.1
333 aa
N
1
166
333
MNM1_beta
C
PF27637 MNM1_beta 65-101 aa
XP_057809891.1
333 aa
N
1
166
333
MNM1_beta
C
PF27637 MNM1_beta 65-101 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057809886.1 Pfam PF27637 MNM1_beta Domain 65 101 1.5e-20 73.1 Metabolic network modulator 1 small beta sheet domain
XP_057809887.1 Pfam PF27637 MNM1_beta Domain 65 101 1.5e-20 73.1 Metabolic network modulator 1 small beta sheet domain
XP_057809888.1 Pfam PF27637 MNM1_beta Domain 65 101 1.5e-20 73.1 Metabolic network modulator 1 small beta sheet domain
XP_057809889.1 Pfam PF27637 MNM1_beta Domain 65 101 1.5e-20 73.1 Metabolic network modulator 1 small beta sheet domain
XP_057809890.1 Pfam PF27637 MNM1_beta Domain 65 101 1.5e-20 73.1 Metabolic network modulator 1 small beta sheet domain
XP_057809891.1 Pfam PF27637 MNM1_beta Domain 65 101 1.5e-20 73.1 Metabolic network modulator 1 small beta sheet domain

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA
XM_057953907.1
AATTTGATTTGACATACGGTTTAAATCAAATTATGAACATCTTGGTAGTGGTAGCTGGTAGGAAGTACTCCATATTTTAGACTACGTTTTGATAATTTGATTCATCCTTGTATTTCACCACAAACAACGATTTTAATTAAAATTCAACGAGTAATGAATGCGCTAATTTTTTTTAAAAAAATAAAGATAAATTCAAGCACTCGTTTCACTCATTAGAAGTTTATACTGAATTCTTTTTAAGGTTTTATCCCCTAAAAAAA...
XM_057953904.1
TCATCCTTGTATTTCACCACAAACAACGATTTTAATTAAAATTCAACGAGTAATGAATGCGCTAATTTTTTTTAAAAAAATAAAGATAAATTCAAGCACTCGTTTCACTCATTAGAAGTTTATACTGAATTCTTTTTAAGGTTTTATCCCCTAAAAAAAATCTTTTAGGGTTTAATAAAAAAGAATAATTCTGAACTATGGTTCAGCTTCGTTGAATAAGCAATAATTTGAACTTAGAAAATCCTCGCCAGGGCTTCGAG...

CDS

6 records

下载 CDS FASTA
LOC131024403
ATGAATCTACTTGATGAAGGGGAGAGCTCTGGCATGTTGATCCAGCCAGCAAAGCGGAGACGTGGTCGTCCACGTAAAGATCCAAGCGTAAAGCCTGCTGGAGCAGCTCATACGCCTGGTTCTGAAGGAGGCATAGCTTACCTTTCTCAGAGAACCAACAGAACAAGGGAAACAGAATGTATGGTGGGCCAGGCAGTAACTGGTTTTGTTGAAGCCACATTCGACTCTGGCTATCTGCTTACTGTTAGAATTGGCAACTC...
LOC131024403
ATGAATCTACTTGATGAAGGGGAGAGCTCTGGCATGTTGATCCAGCCAGCAAAGCGGAGACGTGGTCGTCCACGTAAAGATCCAAGCGTAAAGCCTGCTGGAGCAGCTCATACGCCTGGTTCTGAAGGAGGCATAGCTTACCTTTCTCAGAGAACCAACAGAACAAGGGAAACAGAATGTATGGTGGGCCAGGCAGTAACTGGTTTTGTTGAAGCCACATTCGACTCTGGCTATCTGCTTACTGTTAGAATTGGCAACTC...

Protein

6 records

下载 Protein FASTA
XP_057809886.1
MNLLDEGESSGMLIQPAKRRRGRPRKDPSVKPAGAAHTPGSEGGIAYLSQRTNRTRETECMVGQAVTGFVEATFDSGYLLTVRIGNSSTNLRGVVFKPGHCAPITAENDVAPHAQMIRRSDVRFTFENQSQSPGLGIDMRTSAAVVPSKHKHAPPGRAPAAPSVSAVAPVAPQPITHASYDNGDADVHMVEPLSMLPPVGQVFVPMQPYPSCQDAPGIQQRDDGSFHKGTSIDIDAKSPSQTSDTKITESLKSSPENSAV...
XP_057809887.1
MNLLDEGESSGMLIQPAKRRRGRPRKDPSVKPAGAAHTPGSEGGIAYLSQRTNRTRETECMVGQAVTGFVEATFDSGYLLTVRIGNSSTNLRGVVFKPGHCAPITAENDVAPHAQMIRRSDVRFTFENQSQSPGLGIDMRTSAAVVPSKHKHAPPGRAPAAPSVSAVAPVAPQPITHASYDNGDADVHMVEPLSMLPPVGQVFVPMQPYPSCQDAPGIQQRDDGSFHKGTSIDIDAKSPSQTSDTKITESLKSSPENSAV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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