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调控/突变
TF 结合位点 TF 靶基因 EMS 突变
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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G003163

染色体: Chr05 坐标: 40411728-40417980 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G003163
名称SmilChr05G003163
描述putative pentatricopeptide repeat-containing protein At1g13630
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向40411728 - 40417980 / +

ID 对照

NCBI Gene IDLOC131024419
GeneID131024419
locus_tag-
NCBI NameLOC131024419
原始查询SmilChr05G003163

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述putative pentatricopeptide repeat-containing protein At1g13630
产物putative pentatricopeptide repeat-containing protein At1g13630
ArabidopsisAT1G13630 (AT1G13630)
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837924]
identity=43.7; qcov=0.984; evalue=0; confidence=medium
RiceOs08g0402600
-
identity=31.4; qcov=0.621; evalue=2.9e-90; confidence=low
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:131024419

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057809912.1
2 Nucleus 细胞核 0.00000 XP_057809912.1
3 Chromosome 染色体 0.00000 XP_057809912.1
4 Centromere 着丝粒 0.00000 XP_057809912.1
5 Chromatin 染色质 0.00000 XP_057809912.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:40412150 C T EMS_canonical_SNV CDS_variant 1 B15
Chr5:40412231 GA G 1bp_deletion frameshift_variant 1 B11
Chr5:40412231 GA G 1bp_deletion CDS_variant 1 B11
Chr5:40412971 C T EMS_canonical_SNV CDS_variant 5 A5,B132,C54,C60,D6
Chr5:40413175 G A EMS_canonical_SNV CDS_variant 1 C50
Chr5:40413284 C T EMS_canonical_SNV CDS_variant 1 A5
Chr5:40413451 C T EMS_canonical_SNV CDS_variant 1 D1
Chr5:40413454 G A EMS_canonical_SNV CDS_variant 1 B31
Chr5:40413487 C T EMS_canonical_SNV CDS_variant 1 B20
Chr5:40413950 C T EMS_canonical_SNV CDS_variant 1 B69
Chr5:40414216 G A EMS_canonical_SNV CDS_variant 3 B69,B9,C5
Chr5:40414511 C T EMS_canonical_SNV CDS_variant 1 C42

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057809912.1
826 aa
N
1
413
826
PPR_3
PPR_3
PPR
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_2
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_2
PPR
PPR_3
PPR_2
PPR
PPR_1
TPR_24
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
TPR_24
PPR_long
PPR_1
PPR
PPR_2
PPR_3
PPR_1
TPR_24
PPR_2
PPR
PPR_1
PPR
PPR_3
PPR_1
PPR
PPR_2
PPR
C
PF13812 PPR_3 181-208 aa PF13812 PPR_3 187-234 aa PF01535 PPR 237-260 aa PF13041 PPR_2 265-313 aa PF01535 PPR 268-298 aa PF13812 PPR_3 293-344 aa PF12854 PPR_1 297-324 aa PF01535 PPR 303-333 aa PF13041 PPR_2 304-347 aa PF12854 PPR_1 369-398 aa PF13041 PPR_2 370-419 aa PF01535 PPR 374-403 aa PF13812 PPR_3 394-442 aa PF12854 PPR_1 401-432 aa PF01535 PPR 408-433 aa PF13041 PPR_2 409-454 aa PF01535 PPR 444-468 aa PF13812 PPR_3 504-555 aa PF13041 PPR_2 511-559 aa PF01535 PPR 513-543 aa PF12854 PPR_1 541-574 aa PF23276 TPR_24 541-642 aa PF13041 PPR_2 545-593 aa PF01535 PPR 548-577 aa PF13812 PPR_3 570-626 aa PF12854 PPR_1 577-609 aa PF13041 PPR_2 580-629 aa PF01535 PPR 583-613 aa PF23276 TPR_24 585-676 aa PF17177 PPR_long 598-695 aa PF12854 PPR_1 612-643 aa PF01535 PPR 618-648 aa PF13041 PPR_2 623-664 aa PF13812 PPR_3 639-695 aa PF12854 PPR_1 646-679 aa PF23276 TPR_24 647-748 aa PF13041 PPR_2 650-698 aa PF01535 PPR 654-683 aa PF12854 PPR_1 682-711 aa PF01535 PPR 688-716 aa PF13812 PPR_3 709-766 aa PF12854 PPR_1 718-748 aa PF01535 PPR 723-752 aa PF13041 PPR_2 723-769 aa PF01535 PPR 760-787 aa
XP_057809913.1
826 aa
N
1
413
826
PPR_3
PPR_3
PPR
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_2
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_2
PPR
PPR_3
PPR_2
PPR
PPR_1
TPR_24
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
TPR_24
PPR_long
PPR_1
PPR
PPR_2
PPR_3
PPR_1
TPR_24
PPR_2
PPR
PPR_1
PPR
PPR_3
PPR_1
PPR
PPR_2
PPR
C
PF13812 PPR_3 181-208 aa PF13812 PPR_3 187-234 aa PF01535 PPR 237-260 aa PF13041 PPR_2 265-313 aa PF01535 PPR 268-298 aa PF13812 PPR_3 293-344 aa PF12854 PPR_1 297-324 aa PF01535 PPR 303-333 aa PF13041 PPR_2 304-347 aa PF12854 PPR_1 369-398 aa PF13041 PPR_2 370-419 aa PF01535 PPR 374-403 aa PF13812 PPR_3 394-442 aa PF12854 PPR_1 401-432 aa PF01535 PPR 408-433 aa PF13041 PPR_2 409-454 aa PF01535 PPR 444-468 aa PF13812 PPR_3 504-555 aa PF13041 PPR_2 511-559 aa PF01535 PPR 513-543 aa PF12854 PPR_1 541-574 aa PF23276 TPR_24 541-642 aa PF13041 PPR_2 545-593 aa PF01535 PPR 548-577 aa PF13812 PPR_3 570-626 aa PF12854 PPR_1 577-609 aa PF13041 PPR_2 580-629 aa PF01535 PPR 583-613 aa PF23276 TPR_24 585-676 aa PF17177 PPR_long 598-695 aa PF12854 PPR_1 612-643 aa PF01535 PPR 618-648 aa PF13041 PPR_2 623-664 aa PF13812 PPR_3 639-695 aa PF12854 PPR_1 646-679 aa PF23276 TPR_24 647-748 aa PF13041 PPR_2 650-698 aa PF01535 PPR 654-683 aa PF12854 PPR_1 682-711 aa PF01535 PPR 688-716 aa PF13812 PPR_3 709-766 aa PF12854 PPR_1 718-748 aa PF01535 PPR 723-752 aa PF13041 PPR_2 723-769 aa PF01535 PPR 760-787 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057809912.1 Pfam PF13812 PPR_3 Repeat 181 208 3.1e-60 200.9 Pentatricopeptide repeat domain
XP_057809912.1 Pfam PF13812 PPR_3 Repeat 187 234 3.1e-60 200.9 Pentatricopeptide repeat domain
XP_057809912.1 Pfam PF01535 PPR Repeat 237 260 2.2e-90 291.5 PPR repeat
XP_057809912.1 Pfam PF13041 PPR_2 Repeat 265 313 5.8e-140 456.1 PPR repeat family
XP_057809912.1 Pfam PF01535 PPR Repeat 268 298 2.2e-90 291.5 PPR repeat
XP_057809912.1 Pfam PF13812 PPR_3 Repeat 293 344 3.1e-60 200.9 Pentatricopeptide repeat domain
XP_057809912.1 Pfam PF12854 PPR_1 Repeat 297 324 2.6e-118 386.1 PPR repeat
XP_057809912.1 Pfam PF01535 PPR Repeat 303 333 2.2e-90 291.5 PPR repeat
XP_057809912.1 Pfam PF13041 PPR_2 Repeat 304 347 5.8e-140 456.1 PPR repeat family
XP_057809912.1 Pfam PF12854 PPR_1 Repeat 369 398 2.6e-118 386.1 PPR repeat
XP_057809912.1 Pfam PF13041 PPR_2 Repeat 370 419 5.8e-140 456.1 PPR repeat family
XP_057809912.1 Pfam PF01535 PPR Repeat 374 403 2.2e-90 291.5 PPR repeat
XP_057809912.1 Pfam PF13812 PPR_3 Repeat 394 442 3.1e-60 200.9 Pentatricopeptide repeat domain
XP_057809912.1 Pfam PF12854 PPR_1 Repeat 401 432 2.6e-118 386.1 PPR repeat
XP_057809912.1 Pfam PF01535 PPR Repeat 408 433 2.2e-90 291.5 PPR repeat
XP_057809912.1 Pfam PF13041 PPR_2 Repeat 409 454 5.8e-140 456.1 PPR repeat family
XP_057809912.1 Pfam PF01535 PPR Repeat 444 468 2.2e-90 291.5 PPR repeat
XP_057809912.1 Pfam PF13812 PPR_3 Repeat 504 555 3.1e-60 200.9 Pentatricopeptide repeat domain
XP_057809912.1 Pfam PF13041 PPR_2 Repeat 511 559 5.8e-140 456.1 PPR repeat family
XP_057809912.1 Pfam PF01535 PPR Repeat 513 543 2.2e-90 291.5 PPR repeat
XP_057809912.1 Pfam PF12854 PPR_1 Repeat 541 574 2.6e-118 386.1 PPR repeat
XP_057809912.1 Pfam PF23276 TPR_24 Repeat 541 642 1.3e-37 129.3 Pentatricopeptide repeat-containing protein
XP_057809912.1 Pfam PF13041 PPR_2 Repeat 545 593 5.8e-140 456.1 PPR repeat family
XP_057809912.1 Pfam PF01535 PPR Repeat 548 577 2.2e-90 291.5 PPR repeat
XP_057809912.1 Pfam PF13812 PPR_3 Repeat 570 626 3.1e-60 200.9 Pentatricopeptide repeat domain
XP_057809912.1 Pfam PF12854 PPR_1 Repeat 577 609 2.6e-118 386.1 PPR repeat
XP_057809912.1 Pfam PF13041 PPR_2 Repeat 580 629 5.8e-140 456.1 PPR repeat family
XP_057809912.1 Pfam PF01535 PPR Repeat 583 613 2.2e-90 291.5 PPR repeat
XP_057809912.1 Pfam PF23276 TPR_24 Repeat 585 676 1.3e-37 129.3 Pentatricopeptide repeat-containing protein
XP_057809912.1 Pfam PF17177 PPR_long Repeat 598 695 7.3e-35 121.0 Pentacotripeptide-repeat region of PRORP
XP_057809912.1 Pfam PF12854 PPR_1 Repeat 612 643 2.6e-118 386.1 PPR repeat
XP_057809912.1 Pfam PF01535 PPR Repeat 618 648 2.2e-90 291.5 PPR repeat
XP_057809912.1 Pfam PF13041 PPR_2 Repeat 623 664 5.8e-140 456.1 PPR repeat family
XP_057809912.1 Pfam PF13812 PPR_3 Repeat 639 695 3.1e-60 200.9 Pentatricopeptide repeat domain
XP_057809912.1 Pfam PF12854 PPR_1 Repeat 646 679 2.6e-118 386.1 PPR repeat
XP_057809912.1 Pfam PF23276 TPR_24 Repeat 647 748 1.3e-37 129.3 Pentatricopeptide repeat-containing protein
XP_057809912.1 Pfam PF13041 PPR_2 Repeat 650 698 5.8e-140 456.1 PPR repeat family
XP_057809912.1 Pfam PF01535 PPR Repeat 654 683 2.2e-90 291.5 PPR repeat
XP_057809912.1 Pfam PF12854 PPR_1 Repeat 682 711 2.6e-118 386.1 PPR repeat
XP_057809912.1 Pfam PF01535 PPR Repeat 688 716 2.2e-90 291.5 PPR repeat
XP_057809912.1 Pfam PF13812 PPR_3 Repeat 709 766 3.1e-60 200.9 Pentatricopeptide repeat domain
XP_057809912.1 Pfam PF12854 PPR_1 Repeat 718 748 2.6e-118 386.1 PPR repeat
XP_057809912.1 Pfam PF01535 PPR Repeat 723 752 2.2e-90 291.5 PPR repeat
XP_057809912.1 Pfam PF13041 PPR_2 Repeat 723 769 5.8e-140 456.1 PPR repeat family
XP_057809912.1 Pfam PF01535 PPR Repeat 760 787 2.2e-90 291.5 PPR repeat
XP_057809913.1 Pfam PF13812 PPR_3 Repeat 181 208 3.1e-60 200.9 Pentatricopeptide repeat domain
XP_057809913.1 Pfam PF13812 PPR_3 Repeat 187 234 3.1e-60 200.9 Pentatricopeptide repeat domain
XP_057809913.1 Pfam PF01535 PPR Repeat 237 260 2.2e-90 291.5 PPR repeat
XP_057809913.1 Pfam PF13041 PPR_2 Repeat 265 313 5.8e-140 456.1 PPR repeat family
XP_057809913.1 Pfam PF01535 PPR Repeat 268 298 2.2e-90 291.5 PPR repeat
XP_057809913.1 Pfam PF13812 PPR_3 Repeat 293 344 3.1e-60 200.9 Pentatricopeptide repeat domain
XP_057809913.1 Pfam PF12854 PPR_1 Repeat 297 324 2.6e-118 386.1 PPR repeat
XP_057809913.1 Pfam PF01535 PPR Repeat 303 333 2.2e-90 291.5 PPR repeat
XP_057809913.1 Pfam PF13041 PPR_2 Repeat 304 347 5.8e-140 456.1 PPR repeat family
XP_057809913.1 Pfam PF12854 PPR_1 Repeat 369 398 2.6e-118 386.1 PPR repeat
XP_057809913.1 Pfam PF13041 PPR_2 Repeat 370 419 5.8e-140 456.1 PPR repeat family
XP_057809913.1 Pfam PF01535 PPR Repeat 374 403 2.2e-90 291.5 PPR repeat
XP_057809913.1 Pfam PF13812 PPR_3 Repeat 394 442 3.1e-60 200.9 Pentatricopeptide repeat domain
XP_057809913.1 Pfam PF12854 PPR_1 Repeat 401 432 2.6e-118 386.1 PPR repeat
XP_057809913.1 Pfam PF01535 PPR Repeat 408 433 2.2e-90 291.5 PPR repeat
XP_057809913.1 Pfam PF13041 PPR_2 Repeat 409 454 5.8e-140 456.1 PPR repeat family
XP_057809913.1 Pfam PF01535 PPR Repeat 444 468 2.2e-90 291.5 PPR repeat
XP_057809913.1 Pfam PF13812 PPR_3 Repeat 504 555 3.1e-60 200.9 Pentatricopeptide repeat domain
XP_057809913.1 Pfam PF13041 PPR_2 Repeat 511 559 5.8e-140 456.1 PPR repeat family
XP_057809913.1 Pfam PF01535 PPR Repeat 513 543 2.2e-90 291.5 PPR repeat
XP_057809913.1 Pfam PF12854 PPR_1 Repeat 541 574 2.6e-118 386.1 PPR repeat
XP_057809913.1 Pfam PF23276 TPR_24 Repeat 541 642 1.3e-37 129.3 Pentatricopeptide repeat-containing protein
XP_057809913.1 Pfam PF13041 PPR_2 Repeat 545 593 5.8e-140 456.1 PPR repeat family
XP_057809913.1 Pfam PF01535 PPR Repeat 548 577 2.2e-90 291.5 PPR repeat
XP_057809913.1 Pfam PF13812 PPR_3 Repeat 570 626 3.1e-60 200.9 Pentatricopeptide repeat domain
XP_057809913.1 Pfam PF12854 PPR_1 Repeat 577 609 2.6e-118 386.1 PPR repeat
XP_057809913.1 Pfam PF13041 PPR_2 Repeat 580 629 5.8e-140 456.1 PPR repeat family
XP_057809913.1 Pfam PF01535 PPR Repeat 583 613 2.2e-90 291.5 PPR repeat
XP_057809913.1 Pfam PF23276 TPR_24 Repeat 585 676 1.3e-37 129.3 Pentatricopeptide repeat-containing protein
XP_057809913.1 Pfam PF17177 PPR_long Repeat 598 695 7.3e-35 121.0 Pentacotripeptide-repeat region of PRORP
XP_057809913.1 Pfam PF12854 PPR_1 Repeat 612 643 2.6e-118 386.1 PPR repeat
XP_057809913.1 Pfam PF01535 PPR Repeat 618 648 2.2e-90 291.5 PPR repeat
XP_057809913.1 Pfam PF13041 PPR_2 Repeat 623 664 5.8e-140 456.1 PPR repeat family
XP_057809913.1 Pfam PF13812 PPR_3 Repeat 639 695 3.1e-60 200.9 Pentatricopeptide repeat domain
XP_057809913.1 Pfam PF12854 PPR_1 Repeat 646 679 2.6e-118 386.1 PPR repeat
XP_057809913.1 Pfam PF23276 TPR_24 Repeat 647 748 1.3e-37 129.3 Pentatricopeptide repeat-containing protein
XP_057809913.1 Pfam PF13041 PPR_2 Repeat 650 698 5.8e-140 456.1 PPR repeat family
XP_057809913.1 Pfam PF01535 PPR Repeat 654 683 2.2e-90 291.5 PPR repeat
XP_057809913.1 Pfam PF12854 PPR_1 Repeat 682 711 2.6e-118 386.1 PPR repeat
XP_057809913.1 Pfam PF01535 PPR Repeat 688 716 2.2e-90 291.5 PPR repeat
XP_057809913.1 Pfam PF13812 PPR_3 Repeat 709 766 3.1e-60 200.9 Pentatricopeptide repeat domain
XP_057809913.1 Pfam PF12854 PPR_1 Repeat 718 748 2.6e-118 386.1 PPR repeat
XP_057809913.1 Pfam PF01535 PPR Repeat 723 752 2.2e-90 291.5 PPR repeat
XP_057809913.1 Pfam PF13041 PPR_2 Repeat 723 769 5.8e-140 456.1 PPR repeat family
XP_057809913.1 Pfam PF01535 PPR Repeat 760 787 2.2e-90 291.5 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057953929.1
CGACGAACCTTGAAAAAATGCGGAATGGTGGCGCGAGCCCATAATTTAGCCTGAACCTTCGTCTTAAACCCTAAACCCTAATACCTAATTTCCCATTATTGCTCCCCTTCTTCGCAGTCAAGATGCTCAATGTTCCGGTTAACCACCAGACGACGCCGTCTTCTATCACCCTTGCTCTTCACCACATCTCCGGCATTCTGCTCGATTAGCGCCGCCGCTGCCGCCGTCACGGATTTCCCGCAGAACGACGCTGTCTCACA...
XM_057953930.1
ACCTTGAAAAAATGCGGAATGGTGGCGCGAGCCCATAATTTAGCCTGAACCTTCGTCTTAAACCCTAAACCCTAATACCTAATTTCCCATTATTGCTCCCCTTCTTCGCAGTCAAGATGCTCAATGTTCCGGTTAACCACCAGACGACGCCGTCTTCTATCACCCTTGCTCTTCACCACATCTCCGGCATTCTGCTCGATTAGCGCCGCCGCTGCCGCCGTCACGGATTTCCCGCAGAACGACGCTGTCTCACAAATTAT...

CDS

2 records

下载 CDS FASTA
LOC131024419
ATGTTCCGGTTAACCACCAGACGACGCCGTCTTCTATCACCCTTGCTCTTCACCACATCTCCGGCATTCTGCTCGATTAGCGCCGCCGCTGCCGCCGTCACGGATTTCCCGCAGAACGACGCTGTCTCACAAATTATCGGCCACTTCATCTCTTCTCCCCTTCGTTACAGTCATAAGCTCTTATTAAATTCCCTCAGAAACAGTAATTGGTTTAGGAAGGAAGTTTCCAAGTTGGGGCCTTCAGAAATTGACTCTATCTT...
LOC131024419
ATGTTCCGGTTAACCACCAGACGACGCCGTCTTCTATCACCCTTGCTCTTCACCACATCTCCGGCATTCTGCTCGATTAGCGCCGCCGCTGCCGCCGTCACGGATTTCCCGCAGAACGACGCTGTCTCACAAATTATCGGCCACTTCATCTCTTCTCCCCTTCGTTACAGTCATAAGCTCTTATTAAATTCCCTCAGAAACAGTAATTGGTTTAGGAAGGAAGTTTCCAAGTTGGGGCCTTCAGAAATTGACTCTATCTT...

Protein

2 records

下载 Protein FASTA
XP_057809912.1
MFRLTTRRRRLLSPLLFTTSPAFCSISAAAAAVTDFPQNDAVSQIIGHFISSPLRYSHKLLLNSLRNSNWFRKEVSKLGPSEIDSIFDKISSQSAIEFFFLLQNEFGFKHSQSSQFFIAHLLAEKRRYRALLCHMRMVVQEQGSGSAPLFCELLLKSFRGWGSNHVVWDMLTFVYSRTAMVHDALVVLSKMKDLNIRPSIMTYNSLLHNLRETDIAWDIYSELEDNGPQPSEYTNSIFLDGLCRQSLFLEAINFLREMNK...
XP_057809913.1
MFRLTTRRRRLLSPLLFTTSPAFCSISAAAAAVTDFPQNDAVSQIIGHFISSPLRYSHKLLLNSLRNSNWFRKEVSKLGPSEIDSIFDKISSQSAIEFFFLLQNEFGFKHSQSSQFFIAHLLAEKRRYRALLCHMRMVVQEQGSGSAPLFCELLLKSFRGWGSNHVVWDMLTFVYSRTAMVHDALVVLSKMKDLNIRPSIMTYNSLLHNLRETDIAWDIYSELEDNGPQPSEYTNSIFLDGLCRQSLFLEAINFLREMNK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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