Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G003195`

染色体: Chr05 坐标: 40834821-40839256 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G003195`
名称	SmilChr05G003195
描述	uncharacterized SmilChr05G003195
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	40834821 - 40839256 / `-`

ID 对照

NCBI Gene ID	`LOC131024442`
GeneID	`131024442`
locus_tag	`-`
NCBI Name	`LOC131024442`
原始查询	`SmilChr05G003195`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Metal-dependent phosphohydrolase [Source:NCBI gene (formerly Entrezgene);Acc:839157]; symbol=AT1G26160; hit=AT1G26160; species=arabidopsis; confidence=high
产物	Metal-dependent phosphohydrolase [Source:NCBI gene (formerly Entrezgene);Acc:839157]; symbol=AT1G26160; hit=AT1G26160; species=arabidopsis; confidence=high
Arabidopsis	`AT1G26160` (AT1G26160) Metal-dependent phosphohydrolase [Source:NCBI gene (formerly Entrezgene);Acc:839157] identity=70.1; qcov=0.858; evalue=2.68e-112; confidence=high
Rice	`Os01g0641100` - identity=83.6; qcov=0.678; evalue=1.98e-109; confidence=high
GO	GO:0002953 (5'-deoxynucleotidase activity); GO:0005737 (cytoplasm)
KEGG	smil00230 (Purine metabolism - Salvia miltiorrhiza (redroot sage)); smil00240 (Pyrimidine metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01232 (Nucleotide metabolism - Salvia miltiorrhiza (redroot sage))
Pfam	PF01966 (HD); PF12917 (YfbR-like); PF13023 (HD_3)
InterPro	-
eggNOG	-
NR	GeneID:131024442

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057809933.1`
2	Chloroplast stroma	叶绿体基质	0.80000	`XP_057809933.1`
3	Nucleus	细胞核	0.00000	`XP_057809933.1`
4	Chromosome	染色体	0.00000	`XP_057809933.1`
5	Centromere	着丝粒	0.00000	`XP_057809933.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:40836497`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B104,B63
`Chr5:40838984`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C86

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057809933.1

262 aa

131

262

YfbR-like

HD_3

PF12917 YfbR-like 87-224 aa PF13023 HD_3 92-246 aa PF01966 HD 114-216 aa

XP_057809934.1

261 aa

130

261

YfbR-like

HD_3

PF12917 YfbR-like 87-225 aa PF13023 HD_3 92-247 aa PF01966 HD 114-216 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057809933.1`	Pfam	`PF12917`	YfbR-like	Family	87	224	1e-07	32.6	5'-deoxynucleotidase YfbR-like
`XP_057809933.1`	Pfam	`PF13023`	HD_3	Domain	92	246	1.4e-48	165.6	HD domain
`XP_057809933.1`	Pfam	`PF01966`	HD	Family	114	216	1.8e-09	38.6	HD domain
`XP_057809934.1`	Pfam	`PF12917`	YfbR-like	Family	87	225	8.7e-08	32.8	5'-deoxynucleotidase YfbR-like
`XP_057809934.1`	Pfam	`PF13023`	HD_3	Domain	92	247	8.2e-49	166.4	HD domain
`XP_057809934.1`	Pfam	`PF01966`	HD	Family	114	216	1.8e-09	38.6	HD domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057953951.1
AAATCTTAAACCTAACATCCTCTAAATTATCTTTCCCAATTCATCGCAGCGCCTTGTGGCTGTCGTCAAAAAGCCCCAGACTAGAAAAAGGACAAGAAATTGACCAGAAAAAGGCACAAATTAGGGGCCGGTTTAACAATGGCGTCCGCAGCGGCGGCTAAAGCGAACCCATATTCCATTGCAAACACTAATCTGCAAAAAATAGGATTTTCCCACAAATCCCCCATAAAAGTCCCTTTTTGTTCAGACTCGCCTAGCCC...

XM_057953950.1
CTTAAACCTAACATCCTCTAAATTATCTTTCCCAATTCATCGCAGCGCCTTGTGGCTGTCGTCAAAAAGCCCCAGACTAGAAAAAGGACAAGAAATTGACCAGAAAAAGGCACAAATTAGGGGCCGGTTTAACAATGGCGTCCGCAGCGGCGGCTAAAGCGAACCCATATTCCATTGCAAACACTAATCTGCAAAAAATAGGATTTTCCCACAAATCCCCCATAAAAGTCCCTTTTTGTTCAGACTCGCCTAGCCCAAGA...

CDS

2 records

下载 CDS FASTA

LOC131024442
ATGGCGTCCGCAGCGGCGGCTAAAGCGAACCCATATTCCATTGCAAACACTAATCTGCAAAAAATAGGATTTTCCCACAAATCCCCCATAAAAGTCCCTTTTTGTTCAGACTCGCCTAGCCCAAGACTCGTCGCGGCTCGTTCCAACAACCCGAATCTGGATTCCGCCAAAATGGGTAAAAGTGTTTCTGGGTTTGGATCGGCGCCCGGAAGCCCGGAAAGTTTGCATGCGTCTCCATCTCCTTCTGCCGCCATTGATTT...

Protein

2 records

下载 Protein FASTA

XP_057809933.1
MASAAAAKANPYSIANTNLQKIGFSHKSPIKVPFCSDSPSPRLVAARSNNPNLDSAKMGKSVSGFGSAPGSPESLHASPSPSAAIDFLTLCHRLKSTKRKGWLNHGIKGPESIADHMYRMSLMALIADDAPGVNRERCIKIAIVHDIAEAIVGDITPSDGVPKHEKSRMEQEALDEMCKVLGGGMRAEEIQELWQEYETNSSLEANLVKDFDKVEMILQALEYETAEHGKILDEFFLSTAGKFQTEIGKRWAAEIISRRN...

XP_057809934.1
MASAAAAKANPYSIANTNLQKIGFSHKSPIKVPFCSDSPSPRLVAARSNNPNLDSAKMGKSVSGFGSAPGSPESLHASPSPSAAIDFLTLCHRLKSTKRKGWLNHGIKGPESIADHMYRMSLMALIADDAPGVNRERCIKIAIVHDIAEAIVGDITPSDGVPKHEKSRMEQEALDEMCKVLGGGMRAEEIQELWQEYETNSSLEANLVKDFDKVEMILQALEYETEHGKILDEFFLSTAGKFQTEIGKRWAAEIISRRNS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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