当前解析结果
SmilChr05G003216| 统一新 Gene ID | SmilChr05G003216 |
|---|---|
| 名称 | SmilChr05G003216 |
| 描述 | uncharacterized SmilChr05G003216 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 41267667 - 41272521 / + |
| NCBI Gene ID | LOC131025941 |
|---|---|
| GeneID | 131025941 |
| locus_tag | - |
| NCBI Name | LOC131025941 |
| 原始查询 | SmilChr05G003216 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os12g0539700; species=rice; confidence=low |
| 产物 | hit=Os12g0539700; species=rice; confidence=low |
| Arabidopsis | AT3G51700 (AT3G51700)PIF1 helicase [Source:NCBI gene (formerly Entrezgene);Acc:824333] identity=38; qcov=0.215; evalue=8.52e-51; confidence=weak |
| Rice | Os12g0539700- identity=39.8; qcov=0.341; evalue=1.39e-101; confidence=low |
| GO | GO:0000723 (telomere maintenance); GO:0003678 (DNA helicase activity); GO:0006281 (DNA repair) |
| KEGG | - |
| Pfam | PF05970 (PIF1); PF14214 (Helitron_like_N); PF21530 (Pif1_2B_dom) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025941 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057811702.1 |
| 2 | Chromosome | 染色体 | 0.20000 | XP_057811702.1 |
| 3 | Telomere | 端粒 | 0.20000 | XP_057811702.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057811702.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057811702.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:41267683 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B124,B131 |
Chr5:41267688 |
AC |
A |
1bp_deletion | frameshift_variant | 6 | A24,B22,B34,B41,B61,B94 |
Chr5:41267700 |
C |
T |
EMS_canonical_SNV | stop_gained | 45 | A16,A24,B113,B114,B117,B121,B129,B133,B135,B2,B22,B23,B28,B31,B34,B35,B40,B41,B42,B47,B61,B63,B66,B76,B77,B80,B9,B91,B94,C20,C22,C26,C27,C42,C50,C65,C75,C76,C79,C82,C86,C9,D3,D4,D7 |
Chr5:41267706 |
C |
T |
EMS_canonical_SNV | stop_gained | 6 | B117,B16,B46,B6,C56,C67 |
Chr5:41267720 |
TG |
T |
1bp_deletion | frameshift_variant | 10 | B115,B118,B127,B31,B46,B47,B69,B76,C25,C34 |
Chr5:41267761 |
CA |
C |
1bp_deletion | frameshift_variant | 32 | A10,A18,A24,B107,B113,B120,B18,B25,B28,B40,B44,B52,B59,B62,B64,B96,C10,C11,C28,C3,C37,C45,C48,C52,C57,C63,C72,D10,D11,D2,D5,D9 |
Chr5:41267768 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B68,C48 |
Chr5:41267988 |
G |
GA |
1bp_insertion | frameshift_variant | 44 | A15,A20,A3,B10,B101,B102,B103,B107,B11,B118,B122,B123,B127,B17,B18,B21,B3,B31,B32,B55,B59,B60,B7,B76,B79,B81,B84,B85,B96,C18,C25,C27,C36,C4,C43,C51,C57,C6,C68,C71,C72,C86,D4,D5 |
Chr5:41267992 |
AG |
A |
1bp_deletion | frameshift_variant | 3 | B43,C15,C63 |
Chr5:41267992 |
AG |
A |
1bp_deletion | CDS_variant | 3 | B43,C15,C63 |
Chr5:41267994 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A10,C76 |
Chr5:41268005 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B137,B24,B34,C63,D6 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057811702.1PF14214
Helitron_like_N 319-501 aa
PF05970
PIF1 899-1122 aa
PF21530
Pif1_2B_dom 1172-1218 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057811702.1 |
Pfam | PF14214 |
Helitron_like_N | Domain | 319 | 501 | 4.3e-63 | 213.7 | Helitron helicase-like domain at N-terminus |
XP_057811702.1 |
Pfam | PF05970 |
PIF1 | Family | 899 | 1122 | 2.3e-96 | 322.4 | PIF1-like helicase |
XP_057811702.1 |
Pfam | PF21530 |
Pif1_2B_dom | Domain | 1172 | 1218 | 6.4e-21 | 74.5 | DNA helicase Pif1, 2B domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。