当前解析结果
SmilChr05G003250| 统一新 Gene ID | SmilChr05G003250 |
|---|---|
| 名称 | SmilChr05G003250 |
| 描述 | protein decapping 5 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 41880900 - 41886164 / + |
| NCBI Gene ID | LOC131024612 |
|---|---|
| GeneID | 131024612 |
| locus_tag | - |
| NCBI Name | LOC131024612 |
| 原始查询 | SmilChr05G003250 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein decapping 5 |
| 产物 | protein decapping 5 |
| Arabidopsis | AT1G26110 (DCP5)decapping 5 [Source:NCBI gene (formerly Entrezgene);Acc:839152] identity=54.2; qcov=0.978; evalue=2.54e-160; confidence=high |
| Rice | Os01g0111200- identity=48.6; qcov=0.935; evalue=1.84e-112; confidence=high |
| GO | GO:0000932 (P-body); GO:0003729 (mRNA binding); GO:0033962 (P-body assembly); GO:0034063 (stress granule assembly); GO:1990124 (GO:1990124) |
| KEGG | - |
| Pfam | PF09532 (FDF); PF12701 (LSM14); PF14438 (SM-ATX) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131024612 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057810103.1 |
| 2 | Cytoplasmic granule | 细胞质颗粒 | 1.00000 | XP_057810103.1 |
| 3 | Cytoplasmic ribonucleoprotein granule | Cytoplasmic ribonucleoprotein granule | 1.00000 | XP_057810103.1 |
| 4 | P-body | P-body | 1.00000 | XP_057810103.1 |
| 5 | Stress granule | Stress granule | 0.80000 | XP_057810103.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:41881294 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B102 |
Chr5:41881365 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B44,C42 |
Chr5:41883293 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B104,B65,B68,C48 |
Chr5:41883318 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B50,D11 |
Chr5:41883508 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B31,B45 |
Chr5:41883566 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B68,C48 |
Chr5:41883606 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B109 |
Chr5:41883651 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr5:41883743 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B22 |
Chr5:41883771 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B10,C76 |
Chr5:41883830 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B122,D6 |
Chr5:41883833 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057810103.1PF14438
SM-ATX 22-96 aa
PF12701
LSM14 24-96 aa
PF09532
FDF 456-557 aa
XP_057810105.1PF14438
SM-ATX 22-96 aa
PF12701
LSM14 24-96 aa
PF09532
FDF 456-555 aa
XP_057810106.1PF14438
SM-ATX 22-96 aa
PF12701
LSM14 24-96 aa
PF09532
FDF 456-555 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057810103.1 |
Pfam | PF14438 |
SM-ATX | Domain | 22 | 96 | 2e-12 | 47.8 | Ataxin 2 SM domain |
XP_057810103.1 |
Pfam | PF12701 |
LSM14 | Domain | 24 | 96 | 2.5e-32 | 111.5 | Scd6-like Sm domain |
XP_057810103.1 |
Pfam | PF09532 |
FDF | Domain | 456 | 557 | 3.2e-21 | 76.8 | FDF domain |
XP_057810105.1 |
Pfam | PF14438 |
SM-ATX | Domain | 22 | 96 | 2e-12 | 47.8 | Ataxin 2 SM domain |
XP_057810105.1 |
Pfam | PF12701 |
LSM14 | Domain | 24 | 96 | 2.5e-32 | 111.5 | Scd6-like Sm domain |
XP_057810105.1 |
Pfam | PF09532 |
FDF | Domain | 456 | 555 | 1.5e-19 | 71.4 | FDF domain |
XP_057810106.1 |
Pfam | PF14438 |
SM-ATX | Domain | 22 | 96 | 2e-12 | 47.8 | Ataxin 2 SM domain |
XP_057810106.1 |
Pfam | PF12701 |
LSM14 | Domain | 24 | 96 | 2.5e-32 | 111.5 | Scd6-like Sm domain |
XP_057810106.1 |
Pfam | PF09532 |
FDF | Domain | 456 | 555 | 1.5e-19 | 71.4 | FDF domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。