当前解析结果
SmilChr05G003269| 统一新 Gene ID | SmilChr05G003269 |
|---|---|
| 名称 | SmilChr05G003269 |
| 描述 | uncharacterized SmilChr05G003269 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 42344590 - 42345603 / - |
| NCBI Gene ID | LOC131025953 |
|---|---|
| GeneID | 131025953 |
| locus_tag | - |
| NCBI Name | LOC131025953 |
| 原始查询 | SmilChr05G003269 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829030]; symbol=AT4G29090; hit=AT4G29090; species=arabidopsis; confidence=low |
| 产物 | Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829030]; symbol=AT4G29090; hit=AT4G29090; species=arabidopsis; confidence=low |
| Arabidopsis | AT4G29090 (AT4G29090)Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829030] identity=26.4; qcov=0.991; evalue=8.39e-26; confidence=low |
| Rice | Os01g0967700- identity=26.4; qcov=0.641; evalue=1.47e-11; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity) |
| KEGG | - |
| Pfam | PF13456 (RVT_3); PF13966 (zf-RVT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025953 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.80000 | XP_057811715.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057811715.1 |
| 3 | Cell membrane | 细胞膜 | 0.20000 | XP_057811715.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057811715.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057811715.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:42344660 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B122,B93 |
Chr5:42344679 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
Chr5:42344798 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B6 |
Chr5:42344849 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B20,B47,C33,C72 |
Chr5:42344861 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C17,C61 |
Chr5:42344862 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B66 |
Chr5:42344880 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B23,B45,D11 |
Chr5:42344909 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B128,B90,B92,C27 |
Chr5:42344912 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B20,B47,C33,C72 |
Chr5:42344953 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B122,B93 |
Chr5:42344986 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B20,B47,C33,C72 |
Chr5:42345018 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B24,C82 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057811715.1PF13966
zf-RVT 2-95 aa
PF13456
RVT_3 205-315 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057811715.1 |
Pfam | PF13966 |
zf-RVT | Domain | 2 | 95 | 3.5e-15 | 57.1 | zinc-binding in reverse transcriptase |
XP_057811715.1 |
Pfam | PF13456 |
RVT_3 | Domain | 205 | 315 | 1.4e-20 | 74.1 | Reverse transcriptase-like |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。