当前解析结果
SmilChr05G003282| 统一新 Gene ID | SmilChr05G003282 |
|---|---|
| 名称 | SmilChr05G003282 |
| 描述 | receptor-like protein 4 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 42748652 - 42753150 / + |
| NCBI Gene ID | LOC131024637 |
|---|---|
| GeneID | 131024637 |
| locus_tag | - |
| NCBI Name | LOC131024637 |
| 原始查询 | SmilChr05G003282 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | receptor-like protein 4 |
| 产物 | receptor-like protein 4 |
| Arabidopsis | AT1G25570 (AT1G25570)Di-glucose binding protein with Leucine-rich repeat domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:839144] identity=65.4; qcov=0.948; evalue=0; confidence=high |
| Rice | Os01g0140400 (PLRRP)- identity=53.8; qcov=0.958; evalue=0; confidence=high |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF11721 (Malectin); PF12819 (Malectin_like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131024637 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057810126.1 |
| 2 | Cell wall | 细胞壁 | 0.20000 | XP_057810126.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057810126.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057810126.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057810126.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:42749017 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | C19 |
Chr5:42749017 |
TC |
T |
1bp_deletion | CDS_variant | 1 | C19 |
Chr5:42749033 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A6,B80 |
Chr5:42749197 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C24,C3 |
Chr5:42749203 |
CCA |
C |
2bp_deletion | frameshift_variant | 1 | B42 |
Chr5:42749203 |
CCA |
C |
2bp_deletion | CDS_variant | 1 | B42 |
Chr5:42749226 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B11,B17,C74,C75 |
Chr5:42749354 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B42,B43 |
Chr5:42749412 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B94,C20 |
Chr5:42749476 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B12 |
Chr5:42749476 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B12 |
Chr5:42749500 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A13,B127,B139,C4,D2 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057810126.1PF12819
Malectin_like 33-377 aa
PF11721
Malectin 215-359 aa
PF00560
LRR_1 461-480 aa
PF00560
LRR_1 483-503 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057810126.1 |
Pfam | PF12819 |
Malectin_like | Domain | 33 | 377 | 3e-52 | 178.7 | Malectin-like domain |
XP_057810126.1 |
Pfam | PF11721 |
Malectin | Domain | 215 | 359 | 4.9e-15 | 56.7 | Malectin domain |
XP_057810126.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 461 | 480 | 6e-06 | 26.1 | Leucine Rich Repeat |
XP_057810126.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 483 | 503 | 6e-06 | 26.1 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。