Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G003289`

染色体: Chr05 坐标: 42989545-42990704 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G003289`
名称	SmilChr05G003289
描述	allene oxide cyclase, chloroplastic-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	42989545 - 42990704 / `+`

ID 对照

NCBI Gene ID	`LOC131024642`
GeneID	`131024642`
locus_tag	`-`
NCBI Name	`LOC131024642`
原始查询	`SmilChr05G003289`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	allene oxide cyclase, chloroplastic-like
产物	allene oxide cyclase%2C chloroplastic-like
Arabidopsis	`AT3G25780` (AOC3) allene oxide cyclase 3 [Source:NCBI gene (formerly Entrezgene);Acc:822169] identity=66.8; qcov=0.788; evalue=6.44e-89; confidence=high
Rice	`Os03g0438100` (AOC) - identity=74.6; qcov=0.739; evalue=5.44e-99; confidence=high
GO	GO:0009695 (jasmonic acid biosynthetic process); GO:0046423 (allene-oxide cyclase activity)
KEGG	smil00592 (alpha-Linolenic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF06351 (Allene_ox_cyc)
InterPro	-
eggNOG	-
NR	GeneID:131024642

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057810129.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057810129.1`
3	Chloroplast thylakoid	类囊体	0.20000	`XP_057810129.1`
4	Nucleus	细胞核	0.00000	`XP_057810129.1`
5	Chromosome	染色体	0.00000	`XP_057810129.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:42989845`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B10,B117,C76
`Chr5:42990045`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B42,B43
`Chr5:42990111`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr5:42990295`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B94
`Chr5:42990321`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C76
`Chr5:42990330`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B119
`Chr5:42990570`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B69,B9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810129.1

249 aa

124

249

Allene_ox_cyc

PF06351 Allene_ox_cyc 76-247 aa

XP_057810130.1

245 aa

122

245

Allene_ox_cyc

PF06351 Allene_ox_cyc 71-243 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810129.1`	Pfam	`PF06351`	Allene_ox_cyc	Family	76	247	1.5e-94	315.3	Allene oxide cyclase
`XP_057810130.1`	Pfam	`PF06351`	Allene_ox_cyc	Family	71	243	3.5e-95	317.4	Allene oxide cyclase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057954147.1
TTTCCACACGTAACGACCGCCGCCGACGACCATCTCCATACACATGGGCCGCACGTGGAACAATGAGTTTCCTCGCAAGTGAATTCTAATTCTTCCCCACAACACAACACAATACACCACAACACACCTCTCTCTTCTCTTCCGATATATACATACGCACCTGCATAGCCCAAACGGAATCTTTGTCTCGAGGCTTTCATCATTTATGGCTTTCACTAACTCCATCACTCCCAAGGCTGAAGCACCTTCTGCTCTCCCAT...

XM_057954146.1
CTCTTCTCTTCCGATATATACATACGCACCTGCATAGCCCAAACGGAATCTTTGTCTCGAGGCTTTCATCATTTATGGCTTTCACTAACTCCATCACTCCCAAGGCTGAAGCACCTTCTGCTCTCCCATCCACCGGAAATCGGATCGCCGATCTTCGTTTCTCGACCTCCGTTTCAACCAAAATTTGCAATACTCCGAATCAGAGATCGATTTCCTGCGCCAGATCTTCCAAGCCGCAAGCCTTCTTCGGCCTCTGGAGC...

CDS

2 records

下载 CDS FASTA

LOC131024642
ATGGCTTTCACTAACTCCATCACTCCCAAGGCTGAAGCACCTTCTGCTCTCCCATCCACCGGAAATCGGATCGCCGATCTTCGTTTCTCGACCTCCGTTTCAACCAAAATTTGCAATACTCCGAATCAGAGATCGATTTCCTGCGCCAGATCTTCCAAGCCGCAAGCCTTCTTCGGCCTCTGGAGCAAACCCAAGCCGGAGCCTTCAACTCCATCGTTAATTTCAGCTAAGGTTCAGGAGCTGTACGTGTACGAGATGAA...

Protein

2 records

下载 Protein FASTA

XP_057810129.1
MAFTNSITPKAEAPSALPSTGNRIADLRFSTSVSTKICNTPNQRSISCARSSKPQAFFGLWSKPKPEPSTPSLISAKVQELYVYEMNERDRGSPAYLRLSQKEQNTLGDLVPFSNKLYSGDLQKRLGITAGLCVLIQHFPDQNADRYEAIYSFYFGDYGHISVQGAYLTRSDTYLAVTGGSGVFEGVSGTVKLQQIVFPFKLFYTFYLKGIKDLPAELVVTPVAPSPSVEPSPAAKAAEPQATIANFTN

XP_057810130.1
MAFTNSITPKAEAPSALPSTGNRIADLRFSTSVSTKICNTPNQRSISCARSSKPQAFFGLWSKPKPEPSTPSKVQELYVYEMNERDRGSPAYLRLSQKEQNTLGDLVPFSNKLYSGDLQKRLGITAGLCVLIQHFPDQNADRYEAIYSFYFGDYGHISVQGAYLTRSDTYLAVTGGSGVFEGVSGTVKLQQIVFPFKLFYTFYLKGIKDLPAELVVTPVAPSPSVEPSPAAKAAEPQATIANFTN

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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