当前解析结果
SmilChr05G003333| 统一新 Gene ID | SmilChr05G003333 |
|---|---|
| 名称 | SmilChr05G003333 |
| 描述 | hydroxyproline O-galactosyltransferase HPGT1-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 43719954 - 43725061 / + |
| NCBI Gene ID | LOC131024680 |
|---|---|
| GeneID | 131024680 |
| locus_tag | - |
| NCBI Name | LOC131024680 |
| 原始查询 | SmilChr05G003333 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hydroxyproline O-galactosyltransferase HPGT1-like |
| 产物 | hydroxyproline O-galactosyltransferase HPGT1-like |
| Arabidopsis | AT5G53340 (AT5G53340)Galactosyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:835415] identity=63.4; qcov=0.958; evalue=7.07e-158; confidence=high |
| Rice | Os08g0386700- identity=65.6; qcov=0.967; evalue=4.81e-169; confidence=high |
| GO | GO:0000139 (Golgi membrane); GO:0006486 (GO:0006486); GO:0016758 (hexosyltransferase activity) |
| KEGG | - |
| Pfam | PF01762 (Galactosyl_T) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131024680 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 1.00000 | XP_057810176.1 |
| 2 | Golgi stack | 高尔基堆 | 0.20000 | XP_057810176.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057810176.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057810176.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057810176.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:43720383 |
G |
A |
EMS_canonical_SNV | stop_gained | 5 | B15,B19,C11,C63,C69 |
Chr5:43720383 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B15,B19,C11,C63,C69 |
Chr5:43720391 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A11,A3 |
Chr5:43720543 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B31 |
Chr5:43720555 |
AC |
A |
1bp_deletion | frameshift_variant | 2 | B13,C27 |
Chr5:43720555 |
AC |
A |
1bp_deletion | CDS_variant | 2 | B13,C27 |
Chr5:43720560 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B13,C27 |
Chr5:43721461 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:43721504 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | B112 |
Chr5:43721504 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B112 |
Chr5:43722096 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C61 |
Chr5:43722855 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057810176.1PF01762
Galactosyl_T 121-316 aa
XP_057810177.1PF01762
Galactosyl_T 121-316 aa
XP_057810179.1PF01762
Galactosyl_T 121-316 aa
XP_057810180.1PF01762
Galactosyl_T 121-316 aa
XP_057810181.1PF01762
Galactosyl_T 121-316 aa
XP_057810182.1PF01762
Galactosyl_T 121-316 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057810176.1 |
Pfam | PF01762 |
Galactosyl_T | Family | 121 | 316 | 1.6e-35 | 123.4 | Galactosyltransferase |
XP_057810177.1 |
Pfam | PF01762 |
Galactosyl_T | Family | 121 | 316 | 1.6e-35 | 123.4 | Galactosyltransferase |
XP_057810179.1 |
Pfam | PF01762 |
Galactosyl_T | Family | 121 | 316 | 1.6e-35 | 123.4 | Galactosyltransferase |
XP_057810180.1 |
Pfam | PF01762 |
Galactosyl_T | Family | 121 | 316 | 1.6e-35 | 123.4 | Galactosyltransferase |
XP_057810181.1 |
Pfam | PF01762 |
Galactosyl_T | Family | 121 | 316 | 1.6e-35 | 123.4 | Galactosyltransferase |
XP_057810182.1 |
Pfam | PF01762 |
Galactosyl_T | Family | 121 | 316 | 1.6e-35 | 123.4 | Galactosyltransferase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
6 records
下载 cDNA FASTA6 records
下载 CDS FASTA6 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。