Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G003345`

染色体: Chr05 坐标: 44003931-44008458 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G003345`
名称	SmilChr05G003345
描述	pre-rRNA-processing protein esf2-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	44003931 - 44008458 / `-`

ID 对照

NCBI Gene ID	`LOC131024687`
GeneID	`131024687`
locus_tag	`-`
NCBI Name	`LOC131024687`
原始查询	`SmilChr05G003345`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pre-rRNA-processing protein esf2-like
产物	pre-rRNA-processing protein esf2-like
Arabidopsis	`AT3G56510` (AT3G56510) RNA-binding (RRM/RBD/RNP motifs) family protein [Source:NCBI gene (formerly Entrezgene);Acc:824818] identity=61.5; qcov=0.717; evalue=4.87e-93; confidence=high
Rice	`Os07g0662600` (P0453E03.117) - identity=55.2; qcov=0.714; evalue=6.12e-73; confidence=high
GO	GO:0000447 (endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)); GO:0000472 (endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)); GO:0000480 (endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)); GO:0003723 (RNA binding); GO:0005730 (nucleolus); GO:0034462 (small-subunit processome assembly)
KEGG	-
Pfam	PF27577 (ESF2_C)
InterPro	-
eggNOG	-
NR	GeneID:131024687

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057810189.1`
2	Nucleolus	核仁	1.00000	`XP_057810189.1`
3	Nucleoplasm	核质	0.40000	`XP_057810189.1`
4	Nucleolus rim	Nucleolus rim	0.40000	`XP_057810190.1`
5	Nucleolar fibrillar center	Nucleolar fibrillar center	0.20000	`XP_057810190.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:44004343`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B17
`Chr5:44004361`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A11,A3
`Chr5:44004668`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B125
`Chr5:44004690`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B117,B46
`Chr5:44004901`	`TA`	`T`	1bp_deletion	frameshift_variant	5	B16,B6,C39,C56,C67
`Chr5:44004901`	`TA`	`T`	1bp_deletion	CDS_variant	5	B16,B6,C39,C56,C67
`Chr5:44006083`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B10,B14,C76
`Chr5:44006112`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr5:44006219`	`GCA`	`G`	2bp_deletion	frameshift_variant	1	B42
`Chr5:44006219`	`GCA`	`G`	2bp_deletion	CDS_variant	1	B42
`Chr5:44006238`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A24,B48,B65,B7,B93
`Chr5:44006256`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B136,B140,B33

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810189.1

323 aa

162

323

ESF2_C

PF27577 ESF2_C 205-249 aa

XP_057810190.1

297 aa

148

297

ESF2_C

PF27577 ESF2_C 205-249 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810189.1`	Pfam	`PF27577`	ESF2_C	Domain	205	249	2e-13	50.3	Pre-rRNA-processing protein ESF2 C-terminal domain
`XP_057810190.1`	Pfam	`PF27577`	ESF2_C	Domain	205	249	1.8e-13	50.5	Pre-rRNA-processing protein ESF2 C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057954206.1
GTAATTCTGTATTAACCGTTTAGGCCTTTAGGGCTGAGTTTTCAGTGATACACGCCGCGCCTCCACTCCCCTCCCACTCCCACCGGGCCACCGCGCCTCTTCCCACCTGAGCGCTACCCGCCTCTTCCCACCGGAGTGCCGCCGCGCCAGACCCAGACGCAGACGCGAGACGCTCGGTCGCGATAAATCGGCCCAGACACCGAGCAGTCCCTGCCTTTGCTCGCCTCCGTCTCCAAGCTCCGGCAGCCGCAGTCCCTTCG...

XM_057954207.1
AATTCTGTATTAACCGTTTAGGCCTTTAGGGCTGAGTTTTCAGTGATACACGCCGCGCCTCCACTCCCCTCCCACTCCCACCGGGCCACCGCGCCTCTTCCCACCTGAGCGCTACCCGCCTCTTCCCACCGGAGTGCCGCCGCGCCAGACCCAGACGCAGACGCGAGACGCTCGGTCGCGATAAATCGGCCCAGACACCGAGCAGTCCCTGCCTTTGCTCGCCTCCGTCTCCAAGCTCCGGCAGCCGCAGTCCCTTCGGC...

CDS

2 records

下载 CDS FASTA

LOC131024687
ATGGCTTCGACTCGGCTCCTCTGTCCGGCCTTCAAAACAGCAGTCGGACCGAAAGTGGTTTGCTTCGAATTGCGTGATTATTCAGAGATGAAGTGCAGAGAGAAGTATGAAGCGCTAAGCGAGGTCTTATTTTTCACAAATTTCGTATTTGGTGGAATGGCGGAGGAGGAGGAGATGGCGGAGGAGAGAGAGAGCGTGCAAAGTGGGGATGATGCGAGCTTGGATGAAGAAGCTGTGAGGAGAGAGAGACGGAGGGAGAA...

Protein

2 records

下载 Protein FASTA

XP_057810189.1
MASTRLLCPAFKTAVGPKVVCFELRDYSEMKCREKYEALSEVLFFTNFVFGGMAEEEEMAEERESVQSGDDASLDEEAVRRERRREKKRKRLLKEAEKAEKRGVCYLSRVPPHMNPLRLRQILSQYGEIGRVYLTPEDPANQMRRKKSGGFRGQEFSEGWVEFIDKKVAKRVASMLNGEQIGGKKRSSIYYDLWNIKYLSKFKWDDLKEETEIKNATREQKLVLELSAAKKERDFYLSKVDQSKAISKIGERLKKKRKIE...

XP_057810190.1
MASTRLLCPAFKTAVGPKVVCFELRDYSEMKCREKYEALSEVLFFTNFVFGGMAEEEEMAEERESVQSGDDASLDEEAVRRERRREKKRKRLLKEAEKAEKRGVCYLSRVPPHMNPLRLRQILSQYGEIGRVYLTPEDPANQMRRKKSGGFRGQEFSEGWVEFIDKKVAKRVASMLNGEQIGGKKRSSIYYDLWNIKYLSKFKWDDLKEETEIKNATREQKLVLELSAAKKERDFYLSKVDQSKAISKIGERLKKKRKIE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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