Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G003356`

染色体: Chr05 坐标: 44316208-44326666 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G003356`
名称	SmilChr05G003356
描述	uncharacterized SmilChr05G003356
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	44316208 - 44326666 / `-`

ID 对照

NCBI Gene ID	`LOC131024694`
GeneID	`131024694`
locus_tag	`-`
NCBI Name	`LOC131024694`
原始查询	`SmilChr05G003356`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	crooked neck protein, putative / cell cycle protein [Source:NCBI gene (formerly Entrezgene);Acc:834182]; symbol=AT5G41770; hit=AT5G41770; species=arabidopsis; confidence=weak
产物	crooked neck protein, putative / cell cycle protein [Source:NCBI gene (formerly Entrezgene);Acc:834182]; symbol=AT5G41770; hit=AT5G41770; species=arabidopsis; confidence=weak
Arabidopsis	`AT5G41770` (AT5G41770) crooked neck protein, putative / cell cycle protein [Source:NCBI gene (formerly Entrezgene);Acc:834182] identity=46.4; qcov=0.147; evalue=7.5e-23; confidence=weak
Rice	`Os05g0289400` (P0587F01.11) - identity=43.4; qcov=0.148; evalue=7.61e-20; confidence=weak
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF09331 (DUF1985); PF29561 (DUF8566)
InterPro	-
eggNOG	-
NR	GeneID:131024694

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057810205.1`
2	Chromosome	染色体	0.00000	`XP_057810205.1`
3	Centromere	着丝粒	0.00000	`XP_057810205.1`
4	Chromatin	染色质	0.00000	`XP_057810205.1`
5	Telomere	端粒	0.00000	`XP_057810205.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:44316591`	`CAT`	`C`	2bp_deletion	frameshift_variant	32	A21,B131,B135,B137,B138,B15,B2,B27,B28,B3,B47,B56,B60,B74,B77,B78,B84,B89,C2,C25,C26,C45,C5,C50,C51,C56,C62,C65,C85,D10,D6,D7
`Chr5:44316762`	`AAG`	`A`	2bp_deletion	frameshift_variant	19	A22,A5,B104,B29,B36,B4,B43,B56,B62,B69,B7,B95,B96,C16,C25,C38,C83,C85,D3
`Chr5:44316800`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A7,B1,B30,B33
`Chr5:44316809`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A7,B1,B30,B33
`Chr5:44316826`	`GT`	`G`	1bp_deletion	frameshift_variant	1	B30
`Chr5:44316826`	`GT`	`G`	1bp_deletion	CDS_variant	1	B30
`Chr5:44316903`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C9
`Chr5:44322409`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:44322991`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A2,B70,B82,C78
`Chr5:44323350`	`T`	`TC`	1bp_insertion	frameshift_variant	3	B113,C57,C60
`Chr5:44323350`	`T`	`TC`	1bp_insertion	CDS_variant	3	B113,C57,C60
`Chr5:44323356`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B113,C57,C60

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810205.1

763 aa

382

763

DUF8566

DUF1985

PF29561 DUF8566 289-474 aa PF09331 DUF1985 341-467 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810205.1`	Pfam	`PF29561`	DUF8566	Domain	289	474	3.3e-11	44.1	Domain of unknown function (DUF8566)
`XP_057810205.1`	Pfam	`PF09331`	DUF1985	Family	341	467	2e-16	61.0	Domain of unknown function (DUF1985)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057954222.1
AGCATGTGAATCGTAAGCGCTCGCTCGCCTCAATCACTCAACTTTGTGAAACCCAGTGTTTCCATTATTTTACGCTTGTTTTTCTCCGACGTTCTTGCAGGCTCACAACTGGTTGTAGGAAAGCAGAGCATTTCGTGGTGGCGATAAGCAAGGGATCGCTGCATTCTCGAATTCATTAGGAAACTGAGTTTCTACAGGACGGATGTCAACGACTAATCTGACATTATCGGTTCCAGAACCAATCAAAATTGAAAACTGTG...

CDS

1 records

下载 CDS FASTA

LOC131024694
ATGTCAACGACTAATCTGACATTATCGGTTCCAGAACCAATCAAAATTGAAAACTGTGAATATGAAATTGAAAAAATAGAGCGGGAGAAGAACATGAAGATGGAAACTGGAAACCTTGTGAGAGAACGTGATTTGTTGAAGAAAGAGATCAATTTCCTGGAGAAAACTCAGAACTACACGGAGTTAGAGAAACGTAGTTTGGAGGAGAAGCTGGAAAGGAGACATGAGGAGTTGGATAAAAGGATTCTCCAAATGGAGGA...

Protein

1 records

下载 Protein FASTA

XP_057810205.1
MSTTNLTLSVPEPIKIENCEYEIEKIEREKNMKMETGNLVRERDLLKKEINFLEKTQNYTELEKRSLEEKLERRHEELDKRILQMEEKIKKFRQKKLNLNEKLDRSRRKCEELQHRNVETTQANDELRVKKMESDKAAQLYRSRLDDLELRMLKVEAAQAKTLNVNHANFVGAMDKSAAEDENLNMPDSVENGKVKAEAGNGDAMPPQVCVISDVDSGPSEGIRLSKKGGRNMAYSGIKEDGANVVFPYPGSRPADISAV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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