Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G003359`

染色体: Chr05 坐标: 44377286-44387196 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G003359`
名称	SmilChr05G003359
描述	uncharacterized SmilChr05G003359
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	44377286 - 44387196 / `-`

ID 对照

NCBI Gene ID	`LOC131024696`
GeneID	`131024696`
locus_tag	`-`
NCBI Name	`LOC131024696`
原始查询	`SmilChr05G003359`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	K-box region protein (DUF1985) [Source:NCBI gene (formerly Entrezgene);Acc:840000]; symbol=AT1G31150; hit=AT1G31150; species=arabidopsis; confidence=weak
产物	K-box region protein (DUF1985) [Source:NCBI gene (formerly Entrezgene);Acc:840000]; symbol=AT1G31150; hit=AT1G31150; species=arabidopsis; confidence=weak
Arabidopsis	`AT1G31150` (AT1G31150) K-box region protein (DUF1985) [Source:NCBI gene (formerly Entrezgene);Acc:840000] identity=24.5; qcov=0.213; evalue=3.06e-07; confidence=weak
Rice	`-` -
GO	-
KEGG	-
Pfam	PF09331 (DUF1985); PF29561 (DUF8566)
InterPro	-
eggNOG	-
NR	GeneID:131024696

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057810206.1`
2	Chromosome	染色体	0.20000	`XP_057810206.1`
3	Centromere	着丝粒	0.00000	`XP_057810206.1`
4	Chromatin	染色质	0.00000	`XP_057810206.1`
5	Telomere	端粒	0.00000	`XP_057810206.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:44377377`	`G`	`A`	EMS_canonical_SNV	stop_gained	2	B136,D2
`Chr5:44377377`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B136,D2
`Chr5:44377392`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B73
`Chr5:44377428`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B13,B31,C86
`Chr5:44377456`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr5:44377493`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B129
`Chr5:44377497`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B129
`Chr5:44377507`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C15
`Chr5:44377511`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B102,B125,B6,C14,C63
`Chr5:44377513`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B44,B47,C53
`Chr5:44377522`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A7,B109,B135,B39
`Chr5:44377545`	`G`	`A`	EMS_canonical_SNV	stop_gained	30	A20,B10,B124,B126,B129,B130,B134,B17,B20,B28,B45,B6,B65,B70,B73,B74,B81,C1,C16,C23,C24,C28,C49,C53,C59,C67,C70,C76,D1,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810206.1

788 aa

394

788

DUF1985

PF09331 DUF1985 475-609 aa

XP_057810208.1

787 aa

394

787

DUF1985

PF09331 DUF1985 474-608 aa

XP_057810209.1

785 aa

392

785

DUF1985

PF09331 DUF1985 472-606 aa

XP_057810210.1

765 aa

382

765

DUF8566

DUF1985

PF29561 DUF8566 428-607 aa PF09331 DUF1985 452-586 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810206.1`	Pfam	`PF09331`	DUF1985	Family	475	609	2.8e-11	44.3	Domain of unknown function (DUF1985)
`XP_057810208.1`	Pfam	`PF09331`	DUF1985	Family	474	608	2.8e-11	44.3	Domain of unknown function (DUF1985)
`XP_057810209.1`	Pfam	`PF09331`	DUF1985	Family	472	606	2.8e-11	44.3	Domain of unknown function (DUF1985)
`XP_057810210.1`	Pfam	`PF29561`	DUF8566	Domain	428	607	9.4e-08	32.8	Domain of unknown function (DUF8566)
`XP_057810210.1`	Pfam	`PF09331`	DUF1985	Family	452	586	3e-11	44.2	Domain of unknown function (DUF1985)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057954227.1
TAACAGTAGATTGTTGAGCCGGACTTCGCAAAATAGCGGGCATATGAATTTCGAAATACTATTAAATTCAAATTAATTCCGCAATAATAAGCCAAGTTTGTGTCTTTCCAGCTTCCCACGCCTCAGACTCCATCCTCTCTCTCACACACATACGCAGAGTGCACAAATGTAGTCGCAAACACACCTTCGCCATTTCTGCAAGCTTGCCAGAATCATAAGCCCTCGCCTCCGTTACACTGTTTCACACAAAAGAAATATCT...

XM_057954226.1
CAGTAGATTGTTGAGCCGGACTTCGCAAAATAGCGGGCATATGAATTTCGAAATACTATTAAATTCAAATTAATTCCGCAATAATAAGCCAAGTTTGTGTCTTTCCAGCTTCCCACGCCTCAGACTCCATCCTCTCTCTCACACACATACGCAGAGTGCACAAATGTAGTCGCAAACACACCTTCGCCATTTCTGCAAGCTTGCCAGAATCATAAGCCCTCGCCTCCGTTACACTGTTTCACACAAAAGAAATATCTCCA...

CDS

4 records

下载 CDS FASTA

LOC131024696
ATGGAGCCGATGATTGATCCGAGCTCATCAATTCCGGAACTAATCAAATTTATTAAGTACTCATTTCGCAAATGCGAGTTTGATGAGGTGCAGAATACATTGATGGAGCGGGAAAAAAGTATGAAAGTTGAAATGGAAAAGCTTGTCAGAGAATGTGATGAACTGAAGAAACAGGTTGATTTCCTGGAGCGCTCTAAGGGCTATTCGGAGTTGGAGAAATGTGATCTGGAGGAGAAGCTGAGAGAGAGTCAGAAGAAAGG...

Protein

4 records

下载 Protein FASTA

XP_057810206.1
MEPMIDPSSSIPELIKFIKYSFRKCEFDEVQNTLMEREKSMKVEMEKLVRECDELKKQVDFLERSKGYSELEKCDLEEKLRESQKKGEELDKMIVQTNEKFEKLRSEKHDVENELVRSIGKCEEMDERLAKMGKEIEELRRESLCANKTIEELKAKEIEADRVVQELKRQNNEAAAAIDTELEKNMQNGEVNPEEDRATESPEFPAISGSHASVMQSGGEVPAEKTVSSSSAAGKVVIVICDSDSDGETCIPDTSSGQTK...

XP_057810208.1
MEPMIDPSSSIPELIKFIKYSFRKCEFDEVQNTLMEREKSMKVEMEKLVRECDELKKQVDFLERSKGYSELEKCDLEEKLRESQKKGEELDKMIVQTNEKFEKLRSEKHDVENELVRSIGKCEEMDERLAKMGKEIEELRRESLCANKTIEELKAKEIEADRVVQELKRQNNEAAAAIDTELEKNMQNGEVNPEEDRATESPEFPAISGSHASVMQSGGEVPAEKTVSSSSAAGKVVIVICDSDSDGETCIPDTSSGQTK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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