当前解析结果
SmilChr05G003364| 统一新 Gene ID | SmilChr05G003364 |
|---|---|
| 名称 | SmilChr05G003364 |
| 描述 | uncharacterized SmilChr05G003364 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 44481446 - 44481772 / - |
| NCBI Gene ID | LOC131025981 |
|---|---|
| GeneID | 131025981 |
| locus_tag | - |
| NCBI Name | LOC131025981 |
| 原始查询 | SmilChr05G003364 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os03g0643050; species=rice; confidence=low |
| 产物 | hit=Os03g0643050; species=rice; confidence=low |
| Arabidopsis | AT5G35695 (AT5G35695)nuclease HARBI1-like protein [Source:NCBI gene (formerly Entrezgene);Acc:833543] identity=39.3; qcov=0.519; evalue=9.66e-08; confidence=low |
| Rice | Os03g0643050- identity=37; qcov=1.1; evalue=7.78e-13; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025981 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057811745.1 |
| 2 | Chromosome | 染色体 | 0.20000 | XP_057811745.1 |
| 3 | Telomere | 端粒 | 0.20000 | XP_057811745.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057811745.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057811745.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:44481449 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B26 |
Chr5:44481487 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | B106 |
Chr5:44481487 |
TG |
T |
1bp_deletion | CDS_variant | 1 | B106 |
Chr5:44481497 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B134,B138,C3,C8 |
Chr5:44481512 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B127,B131,B46,B53,D2 |
Chr5:44481552 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B21,B28 |
Chr5:44481634 |
TA |
T |
1bp_deletion | frameshift_variant | 8 | B105,B32,B9,C13,C30,C64,C73,D2 |
Chr5:44481673 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A5,B22,B45,B47,C49 |
Chr5:44481681 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B38,B39 |
Chr5:44481682 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C30,C64 |
Chr5:44481711 |
C |
T |
EMS_canonical_SNV | stop_gained | 4 | B134,B138,C3,C8 |
Chr5:44481711 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B134,B138,C3,C8 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。