Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G003371`

染色体: Chr05 坐标: 44593849-44598808 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G003371`
名称	SmilChr05G003371
描述	uncharacterized SmilChr05G003371
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	44593849 - 44598808 / `-`

ID 对照

NCBI Gene ID	`LOC131024817`
GeneID	`131024817`
locus_tag	`-`
NCBI Name	`LOC131024817`
原始查询	`SmilChr05G003371`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	crooked neck protein, putative / cell cycle protein [Source:NCBI gene (formerly Entrezgene);Acc:834182]; symbol=AT5G41770; hit=AT5G41770; species=arabidopsis; confidence=high
产物	crooked neck protein, putative / cell cycle protein [Source:NCBI gene (formerly Entrezgene);Acc:834182]; symbol=AT5G41770; hit=AT5G41770; species=arabidopsis; confidence=high
Arabidopsis	`AT5G41770` (AT5G41770) crooked neck protein, putative / cell cycle protein [Source:NCBI gene (formerly Entrezgene);Acc:834182] identity=80.7; qcov=0.991; evalue=0; confidence=high
Rice	`Os05g0289400` (P0587F01.11) - identity=77.3; qcov=0.98; evalue=0; confidence=high
GO	GO:0000245 (spliceosomal complex assembly); GO:0000398 (mRNA splicing, via spliceosome); GO:0000974 (Prp19 complex); GO:0005515 (protein binding); GO:0071007 (U2-type catalytic step 2 spliceosome); GO:0071011 (precatalytic spliceosome); GO:0071014 (post-mRNA release spliceosomal complex)
KEGG	smil03040 (Spliceosome - Salvia miltiorrhiza (redroot sage))
Pfam	PF02184 (HAT); PF05843 (Suf); PF13428 (TPR_14); PF23231 (HAT_Syf1_CNRKL1_C); PF23233 (HAT_Syf1_CNRKL1_N); PF23240 (HAT_PRP39_N); PF23241 (HAT_PRP39_C)
InterPro	-
eggNOG	-
NR	GeneID:131024817

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057810337.1`
2	Nucleoplasm	核质	0.80000	`XP_057810337.1`
3	Chromosome	染色体	0.60000	`XP_057810338.1`
4	Nucleolar fibrillar center	Nucleolar fibrillar center	0.20000	`XP_057810337.1`
5	Centromere	着丝粒	0.00000	`XP_057810337.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:44595129`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr5:44595731`	`T`	`TC`	1bp_insertion	frameshift_variant	9	A3,B114,B29,B41,B44,B74,C34,C40,D8
`Chr5:44595846`	`CG`	`C`	1bp_deletion	frameshift_variant	21	A3,B11,B114,B118,B136,B29,B37,B41,B44,B47,B67,B73,B76,B89,C16,C26,C3,C34,C40,C55,C63
`Chr5:44596013`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B73,B89,C22
`Chr5:44596051`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B73,B89,C22
`Chr5:44596105`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B89
`Chr5:44596112`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B89
`Chr5:44597543`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	C28
`Chr5:44597543`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C28
`Chr5:44597573`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C36
`Chr5:44597898`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B128
`Chr5:44598144`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B136

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810337.1

698 aa

349

698

HAT_PRP39_C

HAT_PRP39_N

HAT_Syf1_CNRKL1_N

HAT_Syf1_CNRKL1_C

TPR_14

HAT_Syf1_CNRKL1_C

HAT_PRP39_N

HAT_PRP39_C

HAT

HAT_Syf1_CNRKL1_C

HAT_PRP39_N

HAT_Syf1_CNRKL1_N

HAT_Syf1_CNRKL1_C

HAT_PRP39_N

HAT_PRP39_C

PF23241 HAT_PRP39_C 76-191 aa PF23240 HAT_PRP39_N 77-188 aa PF23233 HAT_Syf1_CNRKL1_N 79-224 aa PF23231 HAT_Syf1_CNRKL1_C 91-154 aa PF13428 TPR_14 93-133 aa PF23231 HAT_Syf1_CNRKL1_C 126-240 aa PF23240 HAT_PRP39_N 173-304 aa PF23241 HAT_PRP39_C 193-294 aa PF02184 HAT 207-235 aa PF23231 HAT_Syf1_CNRKL1_C 241-321 aa PF23240 HAT_PRP39_N 324-450 aa PF23233 HAT_Syf1_CNRKL1_N 327-487 aa PF23231 HAT_Syf1_CNRKL1_C 362-541 aa PF23240 HAT_PRP39_N 458-556 aa PF23241 HAT_PRP39_C 528-626 aa

XP_057810338.1

459 aa

230

459

HAT_PRP39_C

HAT_PRP39_N

HAT_Syf1_CNRKL1_N

HAT_Syf1_CNRKL1_C

TPR_14

HAT_Syf1_CNRKL1_C

HAT_PRP39_N

Suf

HAT_PRP39_C

HAT

HAT_Syf1_CNRKL1_C

HAT_PRP39_N

HAT_Syf1_CNRKL1_N

HAT_Syf1_CNRKL1_C

HAT_PRP39_C

PF23241 HAT_PRP39_C 76-191 aa PF23240 HAT_PRP39_N 77-188 aa PF23233 HAT_Syf1_CNRKL1_N 79-224 aa PF23231 HAT_Syf1_CNRKL1_C 91-153 aa PF13428 TPR_14 93-133 aa PF23231 HAT_Syf1_CNRKL1_C 126-240 aa PF23240 HAT_PRP39_N 173-304 aa PF05843 Suf 176-264 aa PF23241 HAT_PRP39_C 193-294 aa PF02184 HAT 207-235 aa PF23231 HAT_Syf1_CNRKL1_C 241-320 aa PF23240 HAT_PRP39_N 324-451 aa PF23233 HAT_Syf1_CNRKL1_N 327-451 aa PF23231 HAT_Syf1_CNRKL1_C 328-451 aa PF23241 HAT_PRP39_C 340-449 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810337.1`	Pfam	`PF23241`	HAT_PRP39_C	Repeat	76	191	2.7e-45	154.6	PRP39 C-terminal HAT repeat
`XP_057810337.1`	Pfam	`PF23240`	HAT_PRP39_N	Repeat	77	188	1.9e-41	142.6	PRP39 N-terminal HAT repeat
`XP_057810337.1`	Pfam	`PF23233`	HAT_Syf1_CNRKL1_N	Repeat	79	224	3.2e-41	141.5	Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat
`XP_057810337.1`	Pfam	`PF23231`	HAT_Syf1_CNRKL1_C	Repeat	91	154	4.5e-39	135.0	Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat
`XP_057810337.1`	Pfam	`PF13428`	TPR_14	Repeat	93	133	1.2e-28	97.3	Tetratricopeptide repeat
`XP_057810337.1`	Pfam	`PF23231`	HAT_Syf1_CNRKL1_C	Repeat	126	240	4.5e-39	135.0	Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat
`XP_057810337.1`	Pfam	`PF23240`	HAT_PRP39_N	Repeat	173	304	1.9e-41	142.6	PRP39 N-terminal HAT repeat
`XP_057810337.1`	Pfam	`PF23241`	HAT_PRP39_C	Repeat	193	294	2.7e-45	154.6	PRP39 C-terminal HAT repeat
`XP_057810337.1`	Pfam	`PF02184`	HAT	Repeat	207	235	7.9e-24	84.0	HAT (Half-A-TPR) repeat
`XP_057810337.1`	Pfam	`PF23231`	HAT_Syf1_CNRKL1_C	Repeat	241	321	4.5e-39	135.0	Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat
`XP_057810337.1`	Pfam	`PF23240`	HAT_PRP39_N	Repeat	324	450	1.9e-41	142.6	PRP39 N-terminal HAT repeat
`XP_057810337.1`	Pfam	`PF23233`	HAT_Syf1_CNRKL1_N	Repeat	327	487	3.2e-41	141.5	Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat
`XP_057810337.1`	Pfam	`PF23231`	HAT_Syf1_CNRKL1_C	Repeat	362	541	4.5e-39	135.0	Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat
`XP_057810337.1`	Pfam	`PF23240`	HAT_PRP39_N	Repeat	458	556	1.9e-41	142.6	PRP39 N-terminal HAT repeat
`XP_057810337.1`	Pfam	`PF23241`	HAT_PRP39_C	Repeat	528	626	2.7e-45	154.6	PRP39 C-terminal HAT repeat
`XP_057810338.1`	Pfam	`PF23241`	HAT_PRP39_C	Repeat	76	191	3e-34	118.8	PRP39 C-terminal HAT repeat
`XP_057810338.1`	Pfam	`PF23240`	HAT_PRP39_N	Repeat	77	188	8.1e-30	104.8	PRP39 N-terminal HAT repeat
`XP_057810338.1`	Pfam	`PF23233`	HAT_Syf1_CNRKL1_N	Repeat	79	224	1.8e-33	116.3	Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat
`XP_057810338.1`	Pfam	`PF23231`	HAT_Syf1_CNRKL1_C	Repeat	91	153	2e-31	109.9	Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat
`XP_057810338.1`	Pfam	`PF13428`	TPR_14	Repeat	93	133	9.2e-26	88.4	Tetratricopeptide repeat
`XP_057810338.1`	Pfam	`PF23231`	HAT_Syf1_CNRKL1_C	Repeat	126	240	2e-31	109.9	Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat
`XP_057810338.1`	Pfam	`PF23240`	HAT_PRP39_N	Repeat	173	304	8.1e-30	104.8	PRP39 N-terminal HAT repeat
`XP_057810338.1`	Pfam	`PF05843`	Suf	Repeat	176	264	3.8e-17	62.8	Suppressor of forked protein (Suf)
`XP_057810338.1`	Pfam	`PF23241`	HAT_PRP39_C	Repeat	193	294	3e-34	118.8	PRP39 C-terminal HAT repeat
`XP_057810338.1`	Pfam	`PF02184`	HAT	Repeat	207	235	3.4e-17	62.8	HAT (Half-A-TPR) repeat
`XP_057810338.1`	Pfam	`PF23231`	HAT_Syf1_CNRKL1_C	Repeat	241	320	2e-31	109.9	Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat
`XP_057810338.1`	Pfam	`PF23240`	HAT_PRP39_N	Repeat	324	451	8.1e-30	104.8	PRP39 N-terminal HAT repeat
`XP_057810338.1`	Pfam	`PF23233`	HAT_Syf1_CNRKL1_N	Repeat	327	451	1.8e-33	116.3	Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat
`XP_057810338.1`	Pfam	`PF23231`	HAT_Syf1_CNRKL1_C	Repeat	328	451	2e-31	109.9	Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat
`XP_057810338.1`	Pfam	`PF23241`	HAT_PRP39_C	Repeat	340	449	3e-34	118.8	PRP39 C-terminal HAT repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057954354.1
AGTTTAGGAAATACGCATACTTTTTTCAAAACCCTAGTTCTTTCTAATCCTCTAATTCTCATATATCAACCCTACTACTTTCAGATCCCCCAATCCTCATTTCCGATCAGAAAATCCTCGCGGCCATGGCTAACGCGAGAGAATCCGATCCGAATTTGGGCTATCTAACGAAGAAGGAAACGGAGGTGAAGCTGCCTCGACCTACCCGCGTCAAGAACAAGACGCCGGCTTCGATACAAATCACTGCCGAGCAAATCCTC...

XM_057954355.1
AGTTTAGGAAATACGCATACTTTTTTCAAAACCCTAGTTCTTTCTAATCCTCTAATTCTCATATATCAACCCTACTACTTTCAGATCCCCCAATCCTCATTTCCGATCAGAAAATCCTCGCGGCCATGGCTAACGCGAGAGAATCCGATCCGAATTTGGGCTATCTAACGAAGAAGGAAACGGAGGTGAAGCTGCCTCGACCTACCCGCGTCAAGAACAAGACGCCGGCTTCGATACAAATCACTGCCGAGCAAATCCTC...

CDS

2 records

下载 CDS FASTA

LOC131024817
ATGGCTAACGCGAGAGAATCCGATCCGAATTTGGGCTATCTAACGAAGAAGGAAACGGAGGTGAAGCTGCCTCGACCTACCCGCGTCAAGAACAAGACGCCGGCTTCGATACAAATCACTGCCGAGCAAATCCTCCGCGAAGCTCGAGAGCGTCAGGAGGCAGAAATCCGGCCGCCAAAGCAGAAAATAACCGACTCCACCGAGCTCGGAGATTACCGGCTCCGGAAACGCAAGGAATTCGAAGATTTAATTCGAAGAGT...

Protein

2 records

下载 Protein FASTA

XP_057810337.1
MANARESDPNLGYLTKKETEVKLPRPTRVKNKTPASIQITAEQILREARERQEAEIRPPKQKITDSTELGDYRLRKRKEFEDLIRRVRWNKSVWVKYAKWEESQKDFARARSVWERALEVDYRDHTLWLKYADFEMKNKFVNHARNVWDHATQLLPRVDQLWYKYIHMEEILGNVAAARQIFERWMKWMPDQQGWLSYIKFELRYNEVERAREIFERFVDCHPKVSAWIRFSKFEMKNGEIARARNCYERAVNKLGDDEE...

XP_057810338.1
MANARESDPNLGYLTKKETEVKLPRPTRVKNKTPASIQITAEQILREARERQEAEIRPPKQKITDSTELGDYRLRKRKEFEDLIRRVRWNKSVWVKYAKWEESQKDFARARSVWERALEVDYRDHTLWLKYADFEMKNKFVNHARNVWDHATQLLPRVDQLWYKYIHMEEILGNVAAARQIFERWMKWMPDQQGWLSYIKFELRYNEVERAREIFERFVDCHPKVSAWIRFSKFEMKNGEIARARNCYERAVNKLGDDEE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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