当前解析结果
SmilChr05G003391| 统一新 Gene ID | SmilChr05G003391 |
|---|---|
| 名称 | SmilChr05G003391 |
| 描述 | uncharacterized SmilChr05G003391 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 44947761 - 44949602 / - |
| NCBI Gene ID | LOC131025986 |
|---|---|
| GeneID | 131025986 |
| locus_tag | - |
| NCBI Name | LOC131025986 |
| 原始查询 | SmilChr05G003391 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os04g0191000; species=rice; confidence=weak |
| 产物 | hit=Os04g0191000; species=rice; confidence=weak |
| Arabidopsis | AT5G51080 (AT5G51080)RNase H family protein [Source:NCBI gene (formerly Entrezgene);Acc:835181] identity=31.9; qcov=0.168; evalue=2.62e-08; confidence=weak |
| Rice | Os04g0191000- identity=41.1; qcov=0.261; evalue=4.87e-28; confidence=weak |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF13456 (RVT_3); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025986 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057811750.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057811750.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057811750.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057811750.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057811750.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:44947774 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A14,B100,B42,C62,C63 |
Chr5:44947782 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A21,B58 |
Chr5:44947801 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B20 |
Chr5:44947803 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B20,C86 |
Chr5:44947841 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C1 |
Chr5:44947929 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A1,B124,B20 |
Chr5:44947976 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B20 |
Chr5:44947984 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B10,C56 |
Chr5:44947989 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B108,B122 |
Chr5:44948079 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B130 |
Chr5:44948123 |
G |
A |
EMS_canonical_SNV | stop_gained | 19 | A24,A25,A5,B126,B128,B130,B49,B51,B52,B81,B90,B92,C1,C44,C47,C51,C55,C65,C80 |
Chr5:44948169 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A1,B72,C48,D4 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057811750.1PF00078
RVT_1 2-147 aa
PF17919
RT_RNaseH_2 144-241 aa
PF17917
RT_RNaseH 171-270 aa
PF13456
RVT_3 306-424 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057811750.1 |
Pfam | PF00078 |
RVT_1 | Domain | 2 | 147 | 4.9e-28 | 99.1 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057811750.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 144 | 241 | 5.8e-18 | 65.5 | RNase H-like domain found in reverse transcriptase |
XP_057811750.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 171 | 270 | 1.5e-15 | 57.9 | RNase H-like domain found in reverse transcriptase |
XP_057811750.1 |
Pfam | PF13456 |
RVT_3 | Domain | 306 | 424 | 3.9e-15 | 56.6 | Reverse transcriptase-like |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。