Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G003415`

染色体: Chr05 坐标: 45364669-45371631 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G003415`
名称	SmilChr05G003415
描述	uncharacterized SmilChr05G003415
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	45364669 - 45371631 / `+`

ID 对照

NCBI Gene ID	`LOC131024505`
GeneID	`131024505`
locus_tag	`-`
NCBI Name	`LOC131024505`
原始查询	`SmilChr05G003415`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os06g0529800; species=rice; confidence=high
产物	hit=Os06g0529800; species=rice; confidence=high
Arabidopsis	`AT4G23860` (AT4G23860) PHD finger protein-like protein [Source:NCBI gene (formerly Entrezgene);Acc:828485] identity=52.4; qcov=1.14; evalue=7.5e-149; confidence=high
Rice	`Os06g0529800` - identity=57; qcov=1.03; evalue=1.24e-154; confidence=high
GO	GO:0005737 (cytoplasm); GO:0008270 (zinc ion binding); GO:0061630 (ubiquitin protein ligase activity)
KEGG	-
Pfam	PF02207 (zf-UBR); PF30811 (PHD_UBR7-like); PF31011 (UBR7_C)
InterPro	-
eggNOG	-
NR	GeneID:131024505

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057809994.1`
2	Nucleoplasm	核质	0.60000	`XP_057809994.1`
3	Nuclear body	核内小体	0.20000	`XP_057809997.1`
4	Chromosome	染色体	0.00000	`XP_057809994.1`
5	Centromere	着丝粒	0.00000	`XP_057809994.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:45366983`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B122,B136,B35
`Chr5:45367057`	`G`	`GCA`	2bp_insertion	frameshift_variant	1	B140
`Chr5:45367057`	`G`	`GCA`	2bp_insertion	CDS_variant	1	B140
`Chr5:45367064`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B134,B138,C3,C8
`Chr5:45367918`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B107,B48,B65,B93
`Chr5:45368026`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr5:45370717`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A14
`Chr5:45370959`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A25,B132,B52,C53,C9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057809994.1

399 aa

200

399

zf-UBR

PHD_UBR7-like

UBR7_C

PF02207 zf-UBR 49-107 aa PF30811 PHD_UBR7-like 124-199 aa PF31011 UBR7_C 340-397 aa

XP_057809995.1

399 aa

200

399

zf-UBR

PHD_UBR7-like

UBR7_C

PF02207 zf-UBR 49-107 aa PF30811 PHD_UBR7-like 124-199 aa PF31011 UBR7_C 340-397 aa

XP_057809996.1

399 aa

200

399

zf-UBR

PHD_UBR7-like

UBR7_C

PF02207 zf-UBR 49-107 aa PF30811 PHD_UBR7-like 124-199 aa PF31011 UBR7_C 340-397 aa

XP_057809997.1

371 aa

186

371

zf-UBR

PHD_UBR7-like

UBR7_C

PF02207 zf-UBR 21-79 aa PF30811 PHD_UBR7-like 96-171 aa PF31011 UBR7_C 312-369 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057809994.1`	Pfam	`PF02207`	zf-UBR	Domain	49	107	1.9e-13	51.0	Putative zinc finger in N-recognin (UBR box)
`XP_057809994.1`	Pfam	`PF30811`	PHD_UBR7-like	Domain	124	199	5.9e-23	81.3	UBR7-like PHD finger
`XP_057809994.1`	Pfam	`PF31011`	UBR7_C	Family	340	397	4.5e-22	78.8	UBR7 C-terminal region
`XP_057809995.1`	Pfam	`PF02207`	zf-UBR	Domain	49	107	1.9e-13	51.0	Putative zinc finger in N-recognin (UBR box)
`XP_057809995.1`	Pfam	`PF30811`	PHD_UBR7-like	Domain	124	199	5.9e-23	81.3	UBR7-like PHD finger
`XP_057809995.1`	Pfam	`PF31011`	UBR7_C	Family	340	397	4.5e-22	78.8	UBR7 C-terminal region
`XP_057809996.1`	Pfam	`PF02207`	zf-UBR	Domain	49	107	1.9e-13	51.0	Putative zinc finger in N-recognin (UBR box)
`XP_057809996.1`	Pfam	`PF30811`	PHD_UBR7-like	Domain	124	199	5.9e-23	81.3	UBR7-like PHD finger
`XP_057809996.1`	Pfam	`PF31011`	UBR7_C	Family	340	397	4.5e-22	78.8	UBR7 C-terminal region
`XP_057809997.1`	Pfam	`PF02207`	zf-UBR	Domain	21	79	1.7e-13	51.1	Putative zinc finger in N-recognin (UBR box)
`XP_057809997.1`	Pfam	`PF30811`	PHD_UBR7-like	Domain	96	171	5.2e-23	81.5	UBR7-like PHD finger
`XP_057809997.1`	Pfam	`PF31011`	UBR7_C	Family	312	369	5.3e-22	78.6	UBR7 C-terminal region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057954011.1
AAGAGGCACGAAACACCACCTGACCTGACCGAAATAAAATTGGGGATCGATTTGGCGGGAAAATACCCTTACATCCCCGAGTCCCAATCGAAATACTCATTTTACAAGTGGAAAGAAAGAACCCTAAAACTAATCCCGAAGCCCAATTCTACTGCTATATTCCGCAATCGTGACTACTTTATCTCCCAATTCCACCCCTAAAACCAACCATCTAATTGTTCTTATCCAAGTTATTTATTCTTTTTTTATTTTTCATTCTA...

XM_057954012.1
ACCTGACCGAAATAAAATTGGGGATCGATTTGGCGGGAAAATACCCTTACATCCCCGAGTCCCAATCGAAATACTCATTTTACAAGTGGAAAGAAAGAACCCTAAAACTAATCCCGAAGCCCAATTCTACTGCTATATTCCGCAATCGTGACTACTTTATCTCCCAATTCCACCCCTAAAACCAACCATCTAATTGTTCTTATCCAAGTTATTTATTCTTTTTTTATTTTTCATTCTATTCGCAACCTCGGCTTCCGTCT...

CDS

4 records

下载 CDS FASTA

LOC131024505
ATGTCTGACGTTTTTGACGATGACGCTGATGCTGAGCCCACGATATCGATTGGGGATTACCTGAAATCGGTTGAAGAAGAGGAGCTGGAAGCGGATTTAATTCTGGGAGGTGATGAGGGCAAGGAGTGTACCTACGGAAAAGGGTATGTTAAAAGACAGGCAATTTTCTCATGTTTAACCTGCACACCTGATGGTAATGCTGGGGTCTGCACAGCGTGTTCCTTGGTTTGCCATGATGGCCATGAGATTCTGGAACTATG...

Protein

4 records

下载 Protein FASTA

XP_057809994.1
MSDVFDDDADAEPTISIGDYLKSVEEEELEADLILGGDEGKECTYGKGYVKRQAIFSCLTCTPDGNAGVCTACSLVCHDGHEILELWTKRNFRCDCGNSKFGEFFCKLLASKDVENPENTYNHNFKGAYCTCDLPYPDPSVEEQVEMIQCCICEDWFHEEHIGLQSGDKIPRDEEGEPLYEDFICQGCAVVCSFLTCYSQIISVSDPSDTGKKKAVENSNLISSDKPDDDNGSISNTNSCIVPVEADAEAVTKECNEVAG...

XP_057809995.1
MSDVFDDDADAEPTISIGDYLKSVEEEELEADLILGGDEGKECTYGKGYVKRQAIFSCLTCTPDGNAGVCTACSLVCHDGHEILELWTKRNFRCDCGNSKFGEFFCKLLASKDVENPENTYNHNFKGAYCTCDLPYPDPSVEEQVEMIQCCICEDWFHEEHIGLQSGDKIPRDEEGEPLYEDFICQGCAVVCSFLTCYSQIISVSDPSDTGKKKAVENSNLISSDKPDDDNGSISNTNSCIVPVEADAEAVTKECNEVAG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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