Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G003434`

染色体: Chr05 坐标: 45640451-45650652 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G003434`
名称	SmilChr05G003434
描述	uncharacterized protein At4g10930
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	45640451 - 45650652 / `+`

ID 对照

NCBI Gene ID	`LOC131024525`
GeneID	`131024525`
locus_tag	`-`
NCBI Name	`LOC131024525`
原始查询	`SmilChr05G003434`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	RING/U-box protein [Source:NCBI gene (formerly Entrezgene);Acc:826692]; symbol=AT4G10930; hit=AT4G10930; species=arabidopsis; confidence=medium
产物	RING/U-box protein [Source:NCBI gene (formerly Entrezgene);Acc:826692]; symbol=AT4G10930; hit=AT4G10930; species=arabidopsis; confidence=medium
Arabidopsis	`AT4G10930` (AT4G10930) RING/U-box protein [Source:NCBI gene (formerly Entrezgene);Acc:826692] identity=42.5; qcov=0.746; evalue=2.29e-171; confidence=medium
Rice	`Os12g0209700` (OsRFP) - identity=47.8; qcov=0.192; evalue=2.87e-42; confidence=weak
GO	GO:0016567 (protein ubiquitination); GO:0061630 (ubiquitin protein ligase activity)
KEGG	-
Pfam	PF00097 (zf-C3HC4); PF00628 (PHD); PF13639 (zf-RING_2)
InterPro	-
eggNOG	-
NR	GeneID:131024525

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057810012.1`
2	Nucleoplasm	核质	0.20000	`XP_057810013.1`
3	Chromosome	染色体	0.00000	`XP_057810012.1`
4	Centromere	着丝粒	0.00000	`XP_057810012.1`
5	Chromatin	染色质	0.00000	`XP_057810012.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:45644127`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr5:45645690`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C6,C83
`Chr5:45645814`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A18,C1,C43,C76
`Chr5:45645818`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B46
`Chr5:45645844`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B21,B68,C35,C48
`Chr5:45646107`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B28,B93,D10
`Chr5:45647568`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C39
`Chr5:45647655`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B118,B91,C25
`Chr5:45647795`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B13,D6
`Chr5:45648152`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B21,B68,C35,C48
`Chr5:45648154`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B21,B68,C35,C48
`Chr5:45648426`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B22,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810012.1

1279 aa

640

1279

zf-RING_2

zf-C3HC4

PHD

PF13639 zf-RING_2 32-72 aa PF00097 zf-C3HC4 33-71 aa PF00628 PHD 148-182 aa

XP_057810013.1

1272 aa

636

1272

zf-RING_2

zf-C3HC4

PF13639 zf-RING_2 32-72 aa PF00097 zf-C3HC4 33-71 aa

XP_057810015.1

1254 aa

627

1254

zf-RING_2

zf-C3HC4

PHD

PF13639 zf-RING_2 32-72 aa PF00097 zf-C3HC4 33-71 aa PF00628 PHD 148-182 aa

XP_057810016.1

1247 aa

624

1247

zf-RING_2

zf-C3HC4

PF13639 zf-RING_2 32-72 aa PF00097 zf-C3HC4 33-71 aa

XP_057810017.1

1199 aa

600

1199

PHD

PF00628 PHD 68-102 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810012.1`	Pfam	`PF13639`	zf-RING_2	Domain	32	72	2.2e-06	28.5	Ring finger domain
`XP_057810012.1`	Pfam	`PF00097`	zf-C3HC4	Domain	33	71	8.3e-06	26.3	Zinc finger, C3HC4 type (RING finger)
`XP_057810012.1`	Pfam	`PF00628`	PHD	Domain	148	182	1.5e-06	28.8	PHD-finger
`XP_057810013.1`	Pfam	`PF13639`	zf-RING_2	Domain	32	72	1.1e-06	29.5	Ring finger domain
`XP_057810013.1`	Pfam	`PF00097`	zf-C3HC4	Domain	33	71	1.2e-05	25.7	Zinc finger, C3HC4 type (RING finger)
`XP_057810015.1`	Pfam	`PF13639`	zf-RING_2	Domain	32	72	2.2e-06	28.6	Ring finger domain
`XP_057810015.1`	Pfam	`PF00097`	zf-C3HC4	Domain	33	71	8e-06	26.3	Zinc finger, C3HC4 type (RING finger)
`XP_057810015.1`	Pfam	`PF00628`	PHD	Domain	148	182	1.4e-06	28.9	PHD-finger
`XP_057810016.1`	Pfam	`PF13639`	zf-RING_2	Domain	32	72	1.1e-06	29.5	Ring finger domain
`XP_057810016.1`	Pfam	`PF00097`	zf-C3HC4	Domain	33	71	1.2e-05	25.8	Zinc finger, C3HC4 type (RING finger)
`XP_057810017.1`	Pfam	`PF00628`	PHD	Domain	68	102	4.6e-07	30.5	PHD-finger

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

9 records

下载 cDNA FASTA

XM_057954032.1
AAACAAAACTACGCAAGAGATTTTCGTGAGTTGTGATATATCTCGTTCAAATTCATTAGGAGCATCCAAACACGCCACAAATATTTATGTAGTTGTTTCCCTTTTTCTTTTCTTTAATCATTTTATTGTAGTCGCTAAATCCTCATTTTTTCCTAGCCTTTTTGTGCGATCAAGCTGGTCAGTGTTGACGTTTAACTACTGTTGAAACTCAAATCCCTCGAATTCCTTGGCATCTTAACATTTTGTTAAAGTTTTGATGA...

XM_057954029.1
CACGCCACAAATATTTATGTAGTTGTTTCCCTTTTTCTTTTCTTTAATCATTTTATTGTAGTCGCTAAATCCTCATTTTTTCCTAGCCTTTTTGTGCGATCAAGCTGGTCAGTGTTGACGTTTAACTACTGTTGAAACTCAAATCCCTCGAATTCCTTGGCATCTTAACATTTTGTTAAAGTTTTGATGATTTGTCAGCTTGTTTCTCAAGCCTAGGTTTATGTGGGGAAATGGATGTTGAATTGGTTACAGACGGAATA...

CDS

9 records

下载 CDS FASTA

LOC131024525
ATGGATGTTGAATTGGTTACAGACGGAATATCAGAGGATGAAAATTTCGGTTTTGATGATGGAAGTGAGGATTACTTAAATTATGAGGGAGAACGATGTGGGATTTGTATGGATGTTGTTATTGACAGAGGTGTTCTTGATTGCTGCCAGCATTGGTTCTGTTTTGCATGCATTGACAATTGGGCTACTATCACGAGCCTTTGCCCTCTTTGCCAGAATGAGTTTCAACTGATAACATGCGTACCTGTACATGATACTGT...

Protein

9 records

下载 Protein FASTA

XP_057810012.1
MDVELVTDGISEDENFGFDDGSEDYLNYEGERCGICMDVVIDRGVLDCCQHWFCFACIDNWATITSLCPLCQNEFQLITCVPVHDTVGSSQTDDEADQRDEDWFVEGKTNTLSFPSYYIDENAVVCLDGDGCKIRSGSVEIGEDSDIDTSIACDSCDKWYHAFCVGFDPEGTCEGSWLCPGCTVAKGPQRSDRALVSRINFQNSMEIAGGDCLAVASFSGRVSVSVADDRETAVVISLVEGNQKYQESDVKCSKDMDNKL...

XP_057810013.1
MDVELVTDGISEDENFGFDDGSEDYLNYEGERCGICMDVVIDRGVLDCCQHWFCFACIDNWATITSLCPLCQNEFQLITCVPVHDTVGSSQTDDEADQRDEDWFVEGKTNTLSFPSYYIDENLSAWMEMAAKYGVDQWKLEKIQILIHPLLVIPVINGTMLSVWGLILKVHVKAHGSVQGPQRSDRALVSRINFQNSMEIAGGDCLAVASFSGRVSVSVADDRETAVVISLVEGNQKYQESDVKCSKDMDNKLLSSSTSS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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