Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G003471`

染色体: Chr05 坐标: 46095987-46096603 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G003471`
名称	SmilChr05G003471
描述	uncharacterized SmilChr05G003471
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	46095987 - 46096603 / `-`

ID 对照

NCBI Gene ID	`LOC131024562`
GeneID	`131024562`
locus_tag	`-`
NCBI Name	`LOC131024562`
原始查询	`SmilChr05G003471`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:839223]; symbol=AT1G26800; hit=AT1G26800; species=arabidopsis; confidence=low
产物	RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:839223]; symbol=AT1G26800; hit=AT1G26800; species=arabidopsis; confidence=low
Arabidopsis	`AT1G26800` (AT1G26800) RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:839223] identity=47.5; qcov=0.311; evalue=1.89e-12; confidence=low
Rice	`Os12g0140700` - identity=54.9; qcov=0.26; evalue=5.04e-12; confidence=weak
GO	GO:0005737 (cytoplasm); GO:0016567 (protein ubiquitination); GO:0061630 (ubiquitin protein ligase activity)
KEGG	-
Pfam	PF00097 (zf-C3HC4); PF12678 (zf-rbx1); PF13445 (zf-RING_UBOX); PF13639 (zf-RING_2); PF13923 (zf-C3HC4_2); PF17123 (zf-RING_11)
InterPro	-
eggNOG	-
NR	GeneID:131024562

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.80000	`XP_057810060.1`
2	Cytoplasm	细胞质	0.80000	`XP_057810060.1`
3	Cytosol	细胞质基质	0.40000	`XP_057810060.1`
4	Chromosome	染色体	0.00000	`XP_057810060.1`
5	Centromere	着丝粒	0.00000	`XP_057810060.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:46096058`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B34
`Chr5:46096109`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B110,C62,C82
`Chr5:46096125`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B20,B69,B98,C61,C80
`Chr5:46096128`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A10,D4,D9
`Chr5:46096185`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A16,B131,B46,B53,D6
`Chr5:46096193`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B58,C32,C68
`Chr5:46096396`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C35
`Chr5:46096479`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B31
`Chr5:46096531`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B110,C62,C82

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810060.1

196 aa

196

zf-rbx1

zf-RING_2

zf-RING_11

zf-RING_UBOX

zf-C3HC4

zf-C3HC4_2

PF12678 zf-rbx1 147-190 aa PF13639 zf-RING_2 149-190 aa PF17123 zf-RING_11 150-176 aa PF13445 zf-RING_UBOX 150-187 aa PF00097 zf-C3HC4 150-189 aa PF13923 zf-C3HC4_2 150-189 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810060.1`	Pfam	`PF12678`	zf-rbx1	Domain	147	190	8.4e-08	33.1	RING-H2 zinc finger domain
`XP_057810060.1`	Pfam	`PF13639`	zf-RING_2	Domain	149	190	7.2e-13	49.3	Ring finger domain
`XP_057810060.1`	Pfam	`PF17123`	zf-RING_11	Domain	150	176	4.5e-09	36.6	RING-like zinc finger
`XP_057810060.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	150	187	1.8e-06	28.6	RING-type zinc-finger
`XP_057810060.1`	Pfam	`PF00097`	zf-C3HC4	Domain	150	189	7e-06	26.5	Zinc finger, C3HC4 type (RING finger)
`XP_057810060.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	150	189	2.5e-07	31.1	Zinc finger, C3HC4 type (RING finger)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057954077.1
CTCCCATCCGCAAAAACACACCGAGCATGGATTTCCCGCACCATTGTTTCACGACATTCAACGTAACCAAGCGGTCATTCCGGGCCACTATTTTCCCTCATCTCGAAATCAAATTCAACCTTTTCTTCCGCAACGAGTATTACCACTATGTTATAAACCAAGATTCCAGACTTCAATGCCTGCCTTCCTCGGACAACAGCACCGCCGCGCACGTCATCATCGTTCGAGGACAATTGCGGTACGAAGATGTGCGAGAGGCG...

CDS

1 records

下载 CDS FASTA

LOC131024562
ATGGATTTCCCGCACCATTGTTTCACGACATTCAACGTAACCAAGCGGTCATTCCGGGCCACTATTTTCCCTCATCTCGAAATCAAATTCAACCTTTTCTTCCGCAACGAGTATTACCACTATGTTATAAACCAAGATTCCAGACTTCAATGCCTGCCTTCCTCGGACAACAGCACCGCCGCGCACGTCATCATCGTTCGAGGACAATTGCGGTACGAAGATGTGCGAGAGGCGTTAGGAAACGCCATCGGCGGCCGTCT...

Protein

1 records

下载 Protein FASTA

XP_057810060.1
MDFPHHCFTTFNVTKRSFRATIFPHLEIKFNLFFRNEYYHYVINQDSRLQCLPSSDNSTAAHVIIVRGQLRYEDVREALGNAIGGRLHENECRRAIMLAWEEVRKAFITLPKHTVFDLDLKIWTTHVYLYVVYPRMSLPLLEKCDEEGCCCICLEELGGVALRRMPCSHVFHGGCIKEWLRKSRYCPLCRYQMPAN

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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