Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G003478`

染色体: Chr05 坐标: 46160243-46162703 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G003478`
名称	SmilChr05G003478
描述	3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	46160243 - 46162703 / `+`

ID 对照

NCBI Gene ID	`LOC131024551`
GeneID	`131024551`
locus_tag	`-`
NCBI Name	`LOC131024551`
原始查询	`SmilChr05G003478`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic-like
产物	3-oxoacyl-[acyl-carrier-protein] synthase I%2C chloroplastic-like
Arabidopsis	`AT5G46290` (KASI) 3-ketoacyl-acyl carrier protein synthase I [Source:NCBI gene (formerly Entrezgene);Acc:834671] identity=63.1; qcov=0.994; evalue=0; confidence=high
Rice	`Os04g0445700` - identity=67.8; qcov=0.888; evalue=0; confidence=high
GO	GO:0004315 (3-oxoacyl-[acyl-carrier-protein] synthase activity); GO:0006633 (fatty acid biosynthetic process)
KEGG	smil00061 (Fatty acid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00780 (Biotin metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01212 (Fatty acid metabolism - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage))
Pfam	PF00109 (ketoacyl-synt); PF02801 (Ketoacyl-synt_C)
InterPro	-
eggNOG	-
NR	GeneID:131024551

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057810050.1`
2	Mitochondrion	线粒体	0.20000	`XP_057810050.1`
3	Chloroplast stroma	叶绿体基质	0.20000	`XP_057810050.1`
4	Nucleus	细胞核	0.00000	`XP_057810050.1`
5	Chromosome	染色体	0.00000	`XP_057810050.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:46160412`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B79,B85,C29,C37
`Chr5:46160420`	`GT`	`G`	1bp_deletion	frameshift_variant	1	D7
`Chr5:46160420`	`GT`	`G`	1bp_deletion	CDS_variant	1	D7
`Chr5:46160451`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B104,C11,C2,C69,D11
`Chr5:46160601`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C77
`Chr5:46160613`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B53,C61
`Chr5:46160637`	`TC`	`T`	1bp_deletion	frameshift_variant	33	A10,A15,A7,B1,B105,B109,B110,B12,B127,B134,B138,B16,B2,B33,B35,B41,B44,B53,B6,C20,C3,C30,C39,C49,C53,C56,C61,C68,C71,C75,C77,D3,D9
`Chr5:46160735`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C30
`Chr5:46160781`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C12,C58
`Chr5:46160802`	`CT`	`C`	1bp_deletion	frameshift_variant	21	A11,A23,A5,B117,B122,B137,B29,B4,B44,B46,B7,B73,B97,C19,C31,C54,C58,C69,C77,C9,D8
`Chr5:46161044`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B104,C2,D11
`Chr5:46161061`	`TG`	`T`	1bp_deletion	frameshift_variant	4	B131,B46,B53,D6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810050.1

475 aa

238

475

ketoacyl-synt

Ketoacyl-synt_C

PF00109 ketoacyl-synt 61-309 aa PF02801 Ketoacyl-synt_C 317-430 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810050.1`	Pfam	`PF00109`	ketoacyl-synt	Domain	61	309	2e-50	172.4	Beta-ketoacyl synthase, N-terminal domain
`XP_057810050.1`	Pfam	`PF02801`	Ketoacyl-synt_C	Domain	317	430	3.2e-31	108.5	Beta-ketoacyl synthase, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057954067.1
GTGTTGACATGAGAAAGTCAATGAGCCTTGCAGCCAATACAAACAAAGATGAACATTCACTCCCCTTTAATTTCTTATAAAAGAAAGAATTTATGAGCTGTGCATGGGGTTAAAAAATGTGGAGCATTGTGTGCGCATCTTCTTCTACTTTGCTTACTCAATCAACAAACCCTTACAGTCACAGCAATGCCCTCCCAACCCAGCCATCGCACTCTAAGCTGTTCCTTACAACTTCAGCAAGACGTGGGAAGATCAAATCA...

CDS

1 records

下载 CDS FASTA

LOC131024551
ATGTGGAGCATTGTGTGCGCATCTTCTTCTACTTTGCTTACTCAATCAACAAACCCTTACAGTCACAGCAATGCCCTCCCAACCCAGCCATCGCACTCTAAGCTGTTCCTTACAACTTCAGCAAGACGTGGGAAGATCAAATCAATGCAGATTTCTCCAAAGAGAGAAACTGATCCCAAGAAAAGGATAGTGATAACTGGAATGGGCCTTGTTTCTGTTTTCGGAAGTGACATCGACACTTACTACAACAAACTGCTTGA...

Protein

1 records

下载 Protein FASTA

XP_057810050.1
MWSIVCASSSTLLTQSTNPYSHSNALPTQPSHSKLFLTTSARRGKIKSMQISPKRETDPKKRIVITGMGLVSVFGSDIDTYYNKLLDGVSGITPIDRFDTSDFSVKIAGQIRDFSSEGYINAKDDRRLDDCWRYCLVAGKKALEDATLGKQLLADTAMDKTRMGVLVGSAMGGFTSFNNGVEALVLKGHKKITPFFIPYAIANMGSALLAIDTGFMGPTYSIAAACATSNHCFIAAANHIRQGEADVMVAGATNATITPL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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