当前解析结果
SmilChr05G003479| 统一新 Gene ID | SmilChr05G003479 |
|---|---|
| 名称 | SmilChr05G003479 |
| 描述 | 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 46183040 - 46183742 / + |
| NCBI Gene ID | LOC131026004 |
|---|---|
| GeneID | 131026004 |
| locus_tag | - |
| NCBI Name | LOC131026004 |
| 原始查询 | SmilChr05G003479 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic-like |
| 产物 | 3-oxoacyl-[acyl-carrier-protein] synthase I%2C chloroplastic-like |
| Arabidopsis | AT5G46290 (KASI)3-ketoacyl-acyl carrier protein synthase I [Source:NCBI gene (formerly Entrezgene);Acc:834671] identity=61.8; qcov=0.854; evalue=1.43e-69; confidence=high |
| Rice | Os04g0445700- identity=62.9; qcov=0.839; evalue=1.2e-71; confidence=high |
| GO | GO:0004315 (3-oxoacyl-[acyl-carrier-protein] synthase activity); GO:0006633 (fatty acid biosynthetic process) |
| KEGG | - |
| Pfam | PF00109 (ketoacyl-synt) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131026004 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.60000 | XP_057811768.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057811768.1 |
| 3 | Peroxisome | 过氧化物酶体 | 0.20000 | XP_057811768.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057811768.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057811768.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:46183078 |
AAG |
A |
2bp_deletion | frameshift_variant | 1 | B27 |
Chr5:46183078 |
AAG |
A |
2bp_deletion | CDS_variant | 1 | B27 |
Chr5:46183270 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B16,B6,C39,C56,C67 |
Chr5:46183652 |
G |
GCC |
2bp_insertion | frameshift_variant | 23 | A14,A4,B102,B110,B111,B129,B35,B37,B39,B41,B55,B61,B68,B69,B7,B79,B86,C18,C36,C42,C60,C65,D5 |
Chr5:46183655 |
C |
CT |
1bp_insertion | frameshift_variant | 11 | A14,B111,B37,B39,B41,B61,B68,B7,B86,C18,C60 |
Chr5:46183659 |
T |
TCC |
2bp_insertion | frameshift_variant | 3 | B41,B7,B86 |
Chr5:46183659 |
T |
TCC |
2bp_insertion | CDS_variant | 3 | B41,B7,B86 |
Chr5:46183716 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | B125 |
Chr5:46183716 |
TC |
T |
1bp_deletion | CDS_variant | 1 | B125 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057811768.1PF00109
ketoacyl-synt 14-171 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057811768.1 |
Pfam | PF00109 |
ketoacyl-synt | Domain | 14 | 171 | 2.3e-22 | 80.6 | Beta-ketoacyl synthase, N-terminal domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。