Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G003488`

染色体: Chr05 坐标: 46375262-46376816 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G003488`
名称	SmilChr05G003488
描述	3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	46375262 - 46376816 / `+`

ID 对照

NCBI Gene ID	`LOC131026013`
GeneID	`131026013`
locus_tag	`-`
NCBI Name	`LOC131026013`
原始查询	`SmilChr05G003488`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic-like
产物	3-oxoacyl-[acyl-carrier-protein] synthase I%2C chloroplastic-like
Arabidopsis	`AT5G46290` (KASI) 3-ketoacyl-acyl carrier protein synthase I [Source:NCBI gene (formerly Entrezgene);Acc:834671] identity=69.5; qcov=1; evalue=7.03e-168; confidence=high
Rice	`Os04g0445700` - identity=70.4; qcov=1; evalue=1.5e-168; confidence=high
GO	GO:0004315 (3-oxoacyl-[acyl-carrier-protein] synthase activity); GO:0006633 (fatty acid biosynthetic process)
KEGG	smil00061 (Fatty acid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00780 (Biotin metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01212 (Fatty acid metabolism - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage))
Pfam	PF00109 (ketoacyl-synt); PF02801 (Ketoacyl-synt_C)
InterPro	-
eggNOG	-
NR	GeneID:131026013

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.80000	`XP_057811776.1`
2	Peroxisome	过氧化物酶体	0.80000	`XP_057811776.1`
3	Cytoplasm	细胞质	0.20000	`XP_057811776.1`
4	Nucleus	细胞核	0.00000	`XP_057811776.1`
5	Chromosome	染色体	0.00000	`XP_057811776.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:46375442`	`C`	`CTA`	2bp_insertion	frameshift_variant	6	A18,B45,C1,C43,C76,D4
`Chr5:46375444`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B22
`Chr5:46375598`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B33,C75,D1
`Chr5:46375636`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr5:46375656`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr5:46375769`	`GT`	`G`	1bp_deletion	frameshift_variant	13	A4,B120,B135,B25,B3,B50,B55,B85,C36,C46,C5,C58,C81
`Chr5:46375845`	`A`	`AT`	1bp_insertion	frameshift_variant	12	A7,B12,B127,B132,B5,B54,B64,C52,C53,C6,C83,D8
`Chr5:46375854`	`TGG`	`T`	2bp_deletion	frameshift_variant	6	B102,B107,B111,B134,B135,C4
`Chr5:46375858`	`T`	`TCC`	2bp_insertion	frameshift_variant	6	B102,B107,B111,B134,B135,C4
`Chr5:46376010`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B119,B78,C60
`Chr5:46376148`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr5:46376154`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057811776.1

318 aa

159

318

ketoacyl-synt

Ketoacyl-synt_C

PF00109 ketoacyl-synt 2-152 aa PF02801 Ketoacyl-synt_C 160-273 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057811776.1`	Pfam	`PF00109`	ketoacyl-synt	Domain	2	152	2.1e-37	129.8	Beta-ketoacyl synthase, N-terminal domain
`XP_057811776.1`	Pfam	`PF02801`	Ketoacyl-synt_C	Domain	160	273	9.6e-34	116.7	Beta-ketoacyl synthase, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057955793.1
ATGGAGAAGGAGAGAATGGGAGTGTTGGTGGGAACAGGGATGGGGAGCTACACGGCTTTCACTAATGGAGTGGAAGCCTTACTTGAAAAGGGGAATAAAAAAATAAGTCCATTTTTCGTTCCATATTCACTATCAAACATGGGGTCTGCGTTGCTGGCTATAGACACCGGCTTCATGGGGCCCACTTACTCCATCGCAGCTGCTTGTTCAACTGCAAATTACTGCTTCATTGCTGCTGCAACCCACATTAGACGAGGCGA...

CDS

1 records

下载 CDS FASTA

LOC131026013
ATGGAGAAGGAGAGAATGGGAGTGTTGGTGGGAACAGGGATGGGGAGCTACACGGCTTTCACTAATGGAGTGGAAGCCTTACTTGAAAAGGGGAATAAAAAAATAAGTCCATTTTTCGTTCCATATTCACTATCAAACATGGGGTCTGCGTTGCTGGCTATAGACACCGGCTTCATGGGGCCCACTTACTCCATCGCAGCTGCTTGTTCAACTGCAAATTACTGCTTCATTGCTGCTGCAACCCACATTAGACGAGGCGA...

Protein

1 records

下载 Protein FASTA

XP_057811776.1
MEKERMGVLVGTGMGSYTAFTNGVEALLEKGNKKISPFFVPYSLSNMGSALLAIDTGFMGPTYSIAAACSTANYCFIAAATHIRRGEADVMVAGGTDAAIVPLAIGGCTVARVLSNRNDEPHKASRPWDIHRDGFVMGEGCGVLVMESMEHAMKRGAKVYAEYLGGAATVDAHHITNPRPDGLVVASCIIKALEDAGVAAEEVNYVNAHATSTPVGDLAEVKAINKVFSNTSHLKMNATKSMIGHGLGAAGGLEAIATIK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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