当前解析结果
SmilChr05G003490| 统一新 Gene ID | SmilChr05G003490 |
|---|---|
| 名称 | SmilChr05G003490 |
| 描述 | 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 46382059 - 46384098 / + |
| NCBI Gene ID | LOC131024555 |
|---|---|
| GeneID | 131024555 |
| locus_tag | - |
| NCBI Name | LOC131024555 |
| 原始查询 | SmilChr05G003490 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic-like |
| 产物 | 3-oxoacyl-[acyl-carrier-protein] synthase I%2C chloroplastic-like |
| Arabidopsis | AT5G46290 (KASI)3-ketoacyl-acyl carrier protein synthase I [Source:NCBI gene (formerly Entrezgene);Acc:834671] identity=73.1; qcov=1; evalue=8.44e-151; confidence=high |
| Rice | Os06g0196600 (OsKASI)- identity=72.4; qcov=1; evalue=1.25e-149; confidence=high |
| GO | GO:0004315 (3-oxoacyl-[acyl-carrier-protein] synthase activity); GO:0006633 (fatty acid biosynthetic process) |
| KEGG | smil00061 (Fatty acid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00780 (Biotin metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01212 (Fatty acid metabolism - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00109 (ketoacyl-synt); PF02801 (Ketoacyl-synt_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131024555 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Peroxisome | 过氧化物酶体 | 1.00000 | XP_057810054.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057810054.1 |
| 3 | Mitochondrion | 线粒体 | 0.40000 | XP_057810054.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057810054.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057810054.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:46382197 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
Chr5:46382198 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B104,C2,D11 |
Chr5:46382227 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B127,D2 |
Chr5:46382368 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B22 |
Chr5:46382465 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B22 |
Chr5:46382492 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C24,C3 |
Chr5:46382803 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C34 |
Chr5:46382811 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B24 |
Chr5:46382812 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C34 |
Chr5:46382832 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C34 |
Chr5:46382855 |
C |
CAA |
2bp_insertion | frameshift_variant | 1 | C34 |
Chr5:46382855 |
C |
CAA |
2bp_insertion | CDS_variant | 1 | C34 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057810054.1PF00109
ketoacyl-synt 1-109 aa
PF02801
Ketoacyl-synt_C 117-230 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057810054.1 |
Pfam | PF00109 |
ketoacyl-synt | Domain | 1 | 109 | 2.7e-29 | 103.2 | Beta-ketoacyl synthase, N-terminal domain |
XP_057810054.1 |
Pfam | PF02801 |
Ketoacyl-synt_C | Domain | 117 | 230 | 1.5e-34 | 119.3 | Beta-ketoacyl synthase, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。