当前解析结果
SmilChr05G003497| 统一新 Gene ID | SmilChr05G003497 |
|---|---|
| 名称 | SmilChr05G003497 |
| 描述 | uncharacterized SmilChr05G003497 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 46593138 - 46597076 / + |
| NCBI Gene ID | LOC131026016 |
|---|---|
| GeneID | 131026016 |
| locus_tag | - |
| NCBI Name | LOC131026016 |
| 原始查询 | SmilChr05G003497 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os08g0202300; species=rice; confidence=weak |
| 产物 | hit=Os08g0202300; species=rice; confidence=weak |
| Arabidopsis | ATMG00860- identity=26.9; qcov=0.115; evalue=1.66e-10; confidence=weak |
| Rice | Os08g0202300- identity=31.1; qcov=0.293; evalue=2.24e-58; confidence=weak |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity); GO:0015074 (DNA integration) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF00665 (rve); PF13456 (RVT_3); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF17921 (Integrase_H2C2); PF31073 (DUF8803) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131026016 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057811780.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057811780.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057811780.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057811780.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057811780.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:46593152 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A23,B128,B3 |
Chr5:46593192 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:46593194 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A23,B1,B128,B3 |
Chr5:46593206 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | C18,C4,C46,C81 |
Chr5:46593213 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A18,B64,C21 |
Chr5:46593223 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A2,B1,C19,C78 |
Chr5:46593234 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B122,B56,B65,D11 |
Chr5:46593252 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B22,B58,B79,C32 |
Chr5:46593255 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr5:46593268 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A15,B114,B16,C16,C39 |
Chr5:46593327 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A25,C8,D2 |
Chr5:46593403 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B121 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057811780.1PF00078
RVT_1 352-511 aa
PF17919
RT_RNaseH_2 574-672 aa
PF17917
RT_RNaseH 602-701 aa
PF13456
RVT_3 736-853 aa
PF17921
Integrase_H2C2 944-995 aa
PF00665
rve 1010-1103 aa
PF31073
DUF8803 1233-1292 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057811780.1 |
Pfam | PF00078 |
RVT_1 | Domain | 352 | 511 | 1.1e-31 | 111.0 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057811780.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 574 | 672 | 7.6e-20 | 71.6 | RNase H-like domain found in reverse transcriptase |
XP_057811780.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 602 | 701 | 3.7e-12 | 47.0 | RNase H-like domain found in reverse transcriptase |
XP_057811780.1 |
Pfam | PF13456 |
RVT_3 | Domain | 736 | 853 | 1.4e-16 | 61.3 | Reverse transcriptase-like |
XP_057811780.1 |
Pfam | PF17921 |
Integrase_H2C2 | Domain | 944 | 995 | 6.2e-10 | 39.8 | Integrase zinc binding domain |
XP_057811780.1 |
Pfam | PF00665 |
rve | Domain | 1010 | 1103 | 3.1e-18 | 66.6 | Integrase core domain |
XP_057811780.1 |
Pfam | PF31073 |
DUF8803 | Domain | 1233 | 1292 | 9.7e-23 | 80.5 | Domain of unknown function (DUF8803) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。