Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G003499`

染色体: Chr05 坐标: 46646902-46651539 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G003499`
名称	SmilChr05G003499
描述	auxin response factor 9-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	46646902 - 46651539 / `+`

ID 对照

NCBI Gene ID	`LOC131024542`
GeneID	`131024542`
locus_tag	`-`
NCBI Name	`LOC131024542`
原始查询	`SmilChr05G003499`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	auxin response factor 9-like
产物	auxin response factor 9-like
Arabidopsis	`AT4G23980` (ARF9) auxin response factor 9 [Source:NCBI gene (formerly Entrezgene);Acc:828498] identity=59.7; qcov=0.984; evalue=0; confidence=high
Rice	`Os04g0442000` (OsARF9) - identity=54.3; qcov=0.995; evalue=0; confidence=high
GO	GO:0003677 (DNA binding); GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription); GO:0009725 (response to hormone)
KEGG	smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage))
Pfam	PF02309 (AUX_IAA); PF02362 (B3); PF06507 (ARF_AD)
InterPro	-
eggNOG	-
NR	GeneID:131024542

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057810036.1`
2	Chromosome	染色体	0.00000	`XP_057810036.1`
3	Centromere	着丝粒	0.00000	`XP_057810036.1`
4	Chromatin	染色质	0.00000	`XP_057810036.1`
5	Telomere	端粒	0.00000	`XP_057810036.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:46647588`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A10,D4,D9
`Chr5:46649120`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B71
`Chr5:46649233`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C75
`Chr5:46649385`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B53,C28
`Chr5:46649400`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr5:46650315`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B1,B12,B2,B37
`Chr5:46650369`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr5:46650413`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B53

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810036.1

639 aa

320

639

ARF_AD

AUX_IAA

PF02362 B3 131-231 aa PF06507 ARF_AD 278-359 aa PF02309 AUX_IAA 524-572 aa PF02309 AUX_IAA 583-620 aa

XP_057810037.1

638 aa

319

638

ARF_AD

AUX_IAA

PF02362 B3 131-231 aa PF06507 ARF_AD 278-359 aa PF02309 AUX_IAA 526-571 aa PF02309 AUX_IAA 582-619 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810036.1`	Pfam	`PF02362`	B3	Domain	131	231	1.9e-23	83.0	B3 DNA binding domain
`XP_057810036.1`	Pfam	`PF06507`	ARF_AD	Domain	278	359	2.7e-36	124.0	Auxin response factor ancillary domain
`XP_057810036.1`	Pfam	`PF02309`	AUX_IAA	Family	524	572	8e-13	49.4	AUX/IAA family
`XP_057810036.1`	Pfam	`PF02309`	AUX_IAA	Family	583	620	8e-13	49.4	AUX/IAA family
`XP_057810037.1`	Pfam	`PF02362`	B3	Domain	131	231	1.8e-23	83.0	B3 DNA binding domain
`XP_057810037.1`	Pfam	`PF06507`	ARF_AD	Domain	278	359	2.7e-36	124.0	Auxin response factor ancillary domain
`XP_057810037.1`	Pfam	`PF02309`	AUX_IAA	Family	526	571	4.5e-13	50.2	AUX/IAA family
`XP_057810037.1`	Pfam	`PF02309`	AUX_IAA	Family	582	619	4.5e-13	50.2	AUX/IAA family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057954053.1
GAAAGGTGGAGATGGATTGTTAATTTACGAAACCAAAAATGAAGAAGAAAAAAAAGGGAGTTGGGGAAGGAGAGGTGGTGGCCCCACAAAAAATTTCCCGACAGGAAATGTCATCACGCCTCACCGGAAATACCCAACTCTGGTTAAGATGAGTAACCACGGTTGGCGCATTGCTAACTACCGAGACAACCAAATACACTGTGGGTTCTGCAGTGAAAAAGGAGACAACCTAGCCACGTTCTGTGAAACCGATACAAATT...

XM_057954054.1
GAAAGGTGGAGATGGATTGTTAATTTACGAAACCAAAAATGAAGAAGAAAAAAAAGGGAGTTGGGGAAGGAGAGGTGGTGGCCCCACAAAAAATTTCCCGACAGGAAATGTCATCACGCCTCACCGGAAATACCCAACTCTGGTTAAGATGAGTAACCACGGTTGGCGCATTGCTAACTACCGAGACAACCAAATACACTGTGGGTTCTGCAGTGAAAAAGGAGACAACCTAGCCACGTTCTGTGAAACCGATACAAATT...

CDS

2 records

下载 CDS FASTA

LOC131024542
ATGGCAAACAGAGTGTCCTTGTCTCAGCAGCAGTACGGTGGTTTTCCAGCTGAAGGAGGTGGAGGAAAAGATATAATGTATGAAGAATTATGGAGGGCTTGTGCAGGCCCTTTGGTGGATGTTTCACAGGTTGGAGAGAAAGTTTACTATTTTCCACAAGGTCATATGGAACAATTGGAGGCTTCAACTAATCAAGAACTGAATCAAAGGATACCAATGTTCAATCTACCCTCAAAGATCCTTTGCAGTGTTTTCAACAT...

Protein

2 records

下载 Protein FASTA

XP_057810036.1
MANRVSLSQQQYGGFPAEGGGGKDIMYEELWRACAGPLVDVSQVGEKVYYFPQGHMEQLEASTNQELNQRIPMFNLPSKILCSVFNINLLAEVDTDEVYAQITLMPEADQTQPRSPDMSSDEPPRPVVHSFCKVLTASDTSTHGGFSVLRKHANECLPLLDMTQQTPTQELIAKDLHGVEWHFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFLRGENGELRVGVRHHARQQNSIPSSVISSQSMHLGVLATASHA...

XP_057810037.1
MANRVSLSQQQYGGFPAEGGGGKDIMYEELWRACAGPLVDVSQVGEKVYYFPQGHMEQLEASTNQELNQRIPMFNLPSKILCSVFNINLLAEVDTDEVYAQITLMPEADQTQPRSPDMSSDEPPRPVVHSFCKVLTASDTSTHGGFSVLRKHANECLPLLDMTQQTPTQELIAKDLHGVEWHFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFLRGENGELRVGVRHHARQQNSIPSSVISSQSMHLGVLATASHA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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