Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G003543`

染色体: Chr05 坐标: 47302248-47304332 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G003543`
名称	SmilChr05G003543
描述	pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	47302248 - 47304332 / `+`

ID 对照

NCBI Gene ID	`LOC131024820`
GeneID	`131024820`
locus_tag	`-`
NCBI Name	`LOC131024820`
原始查询	`SmilChr05G003543`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like
产物	pentatricopeptide repeat-containing protein At2g22410%2C mitochondrial-like
Arabidopsis	`AT2G22410` (SLO1) SLOW GROWTH 1 [Source:NCBI gene (formerly Entrezgene);Acc:816772] identity=41.1; qcov=0.932; evalue=8.47e-164; confidence=medium
Rice	`Os12g0233200` - identity=47.7; qcov=0.955; evalue=0; confidence=high
GO	GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0009451 (RNA modification)
KEGG	-
Pfam	PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF20431 (E_motif); PF23276 (TPR_24)
InterPro	-
eggNOG	-
NR	GeneID:131024820

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057810342.1`
2	Nucleus	细胞核	0.00000	`XP_057810342.1`
3	Chromosome	染色体	0.00000	`XP_057810342.1`
4	Centromere	着丝粒	0.00000	`XP_057810342.1`
5	Chromatin	染色质	0.00000	`XP_057810342.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:47302347`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	C1,C43,C76,D4
`Chr5:47302380`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B131,B35,B46,B53
`Chr5:47302392`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A18,C1,C43,C76,D4
`Chr5:47303230`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	C18,C29,C72,D2
`Chr5:47303277`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr5:47303536`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A11,A3,B118,B31,C25
`Chr5:47303591`	`GT`	`G`	1bp_deletion	frameshift_variant	1	B135
`Chr5:47303591`	`GT`	`G`	1bp_deletion	CDS_variant	1	B135
`Chr5:47303631`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B138,B21,B60,B79
`Chr5:47303634`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B138,B21,B60,B79
`Chr5:47303701`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr5:47303793`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B36,D5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810342.1

663 aa

332

663

PPR

PPR_2

PPR_1

PPR_3

PPR

TPR_24

PPR_3

PPR

PPR_1

PPR_2

PPR

PPR_2

PPR

PPR_3

PPR_2

PPR

E_motif

PF01535 PPR 106-133 aa PF13041 PPR_2 203-252 aa PF12854 PPR_1 204-232 aa PF13812 PPR_3 204-250 aa PF01535 PPR 206-236 aa PF23276 TPR_24 208-300 aa PF13812 PPR_3 267-302 aa PF01535 PPR 278-305 aa PF12854 PPR_1 304-332 aa PF13041 PPR_2 304-337 aa PF01535 PPR 307-337 aa PF13041 PPR_2 335-370 aa PF01535 PPR 338-366 aa PF01535 PPR 412-437 aa PF13812 PPR_3 438-485 aa PF13041 PPR_2 439-487 aa PF01535 PPR 441-471 aa PF01535 PPR 477-506 aa PF01535 PPR 513-537 aa PF20431 E_motif 555-617 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810342.1`	Pfam	`PF01535`	PPR	Repeat	106	133	6.5e-68	221.1	PPR repeat
`XP_057810342.1`	Pfam	`PF13041`	PPR_2	Repeat	203	252	7.7e-69	228.3	PPR repeat family
`XP_057810342.1`	Pfam	`PF12854`	PPR_1	Repeat	204	232	2e-45	152.9	PPR repeat
`XP_057810342.1`	Pfam	`PF13812`	PPR_3	Repeat	204	250	1.6e-26	92.9	Pentatricopeptide repeat domain
`XP_057810342.1`	Pfam	`PF01535`	PPR	Repeat	206	236	6.5e-68	221.1	PPR repeat
`XP_057810342.1`	Pfam	`PF23276`	TPR_24	Repeat	208	300	1.8e-14	54.5	Pentatricopeptide repeat-containing protein
`XP_057810342.1`	Pfam	`PF13812`	PPR_3	Repeat	267	302	1.6e-26	92.9	Pentatricopeptide repeat domain
`XP_057810342.1`	Pfam	`PF01535`	PPR	Repeat	278	305	6.5e-68	221.1	PPR repeat
`XP_057810342.1`	Pfam	`PF12854`	PPR_1	Repeat	304	332	2e-45	152.9	PPR repeat
`XP_057810342.1`	Pfam	`PF13041`	PPR_2	Repeat	304	337	7.7e-69	228.3	PPR repeat family
`XP_057810342.1`	Pfam	`PF01535`	PPR	Repeat	307	337	6.5e-68	221.1	PPR repeat
`XP_057810342.1`	Pfam	`PF13041`	PPR_2	Repeat	335	370	7.7e-69	228.3	PPR repeat family
`XP_057810342.1`	Pfam	`PF01535`	PPR	Repeat	338	366	6.5e-68	221.1	PPR repeat
`XP_057810342.1`	Pfam	`PF01535`	PPR	Repeat	412	437	6.5e-68	221.1	PPR repeat
`XP_057810342.1`	Pfam	`PF13812`	PPR_3	Repeat	438	485	1.6e-26	92.9	Pentatricopeptide repeat domain
`XP_057810342.1`	Pfam	`PF13041`	PPR_2	Repeat	439	487	7.7e-69	228.3	PPR repeat family
`XP_057810342.1`	Pfam	`PF01535`	PPR	Repeat	441	471	6.5e-68	221.1	PPR repeat
`XP_057810342.1`	Pfam	`PF01535`	PPR	Repeat	477	506	6.5e-68	221.1	PPR repeat
`XP_057810342.1`	Pfam	`PF01535`	PPR	Repeat	513	537	6.5e-68	221.1	PPR repeat
`XP_057810342.1`	Pfam	`PF20431`	E_motif	Repeat	555	617	2.4e-13	50.8	E motif

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057954359.1
AACAAAGATGAGCTCTGCTGCATATCCATGAAGAAGAGCAAACTTCCAGAGTCATACAAAACCACCAATTTTCTCCTATATGAAACATCTTCAACCGAAGCAATTTTTCTCCTTAAGAAGTCGTTTCAACTTCAGAGCCTTCTCCTCAAGTTCCAAGAAATGGAACTCAAATCCGAACCCAAATCTCATAATCACGCACCCAACTCTTCTTCTCATAGAAGCTTGCAATTCCATGTCGCAGGCAAAGCAAATTCACGCCA...

CDS

1 records

下载 CDS FASTA

LOC131024820
ATGAAACATCTTCAACCGAAGCAATTTTTCTCCTTAAGAAGTCGTTTCAACTTCAGAGCCTTCTCCTCAAGTTCCAAGAAATGGAACTCAAATCCGAACCCAAATCTCATAATCACGCACCCAACTCTTCTTCTCATAGAAGCTTGCAATTCCATGTCGCAGGCAAAGCAAATTCACGCCAACATGACGCGCACCGGCCTCCTCTTCCATCTCTTCCCAATCAGCAGGCTCCTATCTTTTATCGCAGTGGACGAAAGCGG...

Protein

1 records

下载 Protein FASTA

XP_057810342.1
MKHLQPKQFFSLRSRFNFRAFSSSSKKWNSNPNPNLIITHPTLLLIEACNSMSQAKQIHANMTRTGLLFHLFPISRLLSFIAVDESGNLRYANALFSQILEPNVYIWNTIIRGCVRKGFFEAGFCYFVRMVRECVEMDRRSYVFGLKACEGLGDLRVGEFVHCRIWKVGFVGDVVVRNGLIHFYCENGGLSCADRVFRESEMRDVVSWTSIIDGNARNGMIDEALKMFDEMSESNVEPNDVTMVAVFSACAHKGDLRSAE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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