Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G003559`

染色体: Chr05 坐标: 47507998-47520369 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G003559`
名称	SmilChr05G003559
描述	protein ENHANCED DISEASE RESISTANCE 2-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	47507998 - 47520369 / `-`

ID 对照

NCBI Gene ID	`LOC130987059`
GeneID	`130987059`
locus_tag	`-`
NCBI Name	`LOC130987059`
原始查询	`SmilChr05G003559`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein ENHANCED DISEASE RESISTANCE 2-like
产物	protein ENHANCED DISEASE RESISTANCE 2-like
Arabidopsis	`AT4G19040` (EDR2) ENHANCED DISEASE RESISTANCE 2 [Source:NCBI gene (formerly Entrezgene);Acc:827642] identity=71.5; qcov=1.01; evalue=0; confidence=high
Rice	`Os02g0102800` (B1370C05.34-1) - identity=59.9; qcov=1; evalue=0; confidence=high
GO	GO:0008289 (lipid binding)
KEGG	-
Pfam	PF00169 (PH); PF01852 (START); PF07059 (EDR2_C)
InterPro	-
eggNOG	-
NR	GeneID:130987059

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.40000	`XP_057766604.1`
2	Golgi apparatus	高尔基体	0.40000	`XP_057766608.1`
3	Cytosol	细胞质基质	0.20000	`XP_057766604.1`
4	Trans-golgi network	Trans-golgi network	0.20000	`XP_057766604.1`
5	Nucleus	细胞核	0.00000	`XP_057766608.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:47508320`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B108,B122
`Chr5:47508342`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B100
`Chr5:47508628`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B74,B77
`Chr5:47508662`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C10
`Chr5:47508863`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A23,B132,C39
`Chr5:47509769`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B77
`Chr5:47509769`	`GC`	`G`	1bp_deletion	CDS_variant	1	B77
`Chr5:47510223`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A23
`Chr5:47510386`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C1,C43,C76
`Chr5:47510454`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B112,C18,C29,C72,D2
`Chr5:47510602`	`AT`	`A`	1bp_deletion	frameshift_variant	130	A13,A15,A16,A21,A22,A24,A8,A9,B1,B102,B103,B105,B106,B110,B111,B112,B114,B115,B117,B118,B119,B124,B128,B129,B137,B138,B14,B15,B16,B18,B19,B23,B25,B26,B27,B3,B30,B31,B32,B33,B36,B38,B4,B40,B41,B42,B43,B45,B46,B5,B50,B53,B55,B56,B57,B59,B61,B62,B63,B64,B65,B66,B7,B71,B73,B74,B77,B78,B84,B85,B86,B87,B89,B93,B96,B99,C10,C11,C12,C14,C16,C17,C2,C22,C23,C25,C27,C29,C33,C34,C36,C37,C38,C4,C40,C43,C45,C46,C49,C50,C51,C52,C54,C57,C59,C6,C60,C62,C63,C64,C66,C67,C69,C7,C70,C71,C73,C74,C75,C78,C79,C81,C84,C85,D1,D3,D4,D5,D7,D9
`Chr5:47510720`	`G`	`A`	EMS_canonical_SNV	stop_gained	178	A1,A10,A15,A16,A20,A21,A22,A24,A3,A6,A7,A8,A9,B1,B101,B102,B103,B104,B105,B106,B107,B109,B11,B110,B111,B112,B114,B117,B118,B119,B120,B121,B127,B128,B129,B132,B134,B135,B136,B137,B138,B14,B140,B15,B16,B18,B19,B20,B21,B22,B23,B24,B25,B26,B27,B29,B3,B31,B32,B33,B34,B36,B38,B39,B4,B41,B42,B43,B44,B45,B46,B48,B49,B5,B53,B54,B55,B56,B58,B59,B60,B61,B62,B63,B64,B65,B66,B68,B7,B71,B72,B73,B74,B75,B77,B78,B79,B8,B80,B82,B83,B85,B86,B87,B89,B91,B93,B96,B97,B98,B99,C10,C12,C14,C15,C18,C2,C20,C22,C23,C25,C28,C29,C3,C30,C33,C34,C35,C36,C37,C38,C40,C42,C43,C45,C46,C48,C49,C50,C51,C52,C53,C54,C57,C59,C6,C60,C61,C62,C63,C64,C66,C67,C68,C69,C7,C71,C72,C73,C74,C75,C78,C79,C80,C81,C82,C85,C87,D1,D10,D11,D2,D3,D4,D5,D7,D8,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057766604.1

706 aa

353

706

START

EDR2_C

PF00169 PH 6-111 aa PF01852 START 222-377 aa PF07059 EDR2_C 489-693 aa

XP_057766605.1

706 aa

353

706

START

EDR2_C

PF00169 PH 6-111 aa PF01852 START 222-377 aa PF07059 EDR2_C 489-693 aa

XP_057766606.1

705 aa

352

705

START

EDR2_C

PF00169 PH 6-111 aa PF01852 START 222-377 aa PF07059 EDR2_C 488-692 aa

XP_057766607.1

705 aa

352

705

START

EDR2_C

PF00169 PH 6-111 aa PF01852 START 221-376 aa PF07059 EDR2_C 488-692 aa

XP_057766608.1

681 aa

340

681

START

EDR2_C

PF01852 START 197-352 aa PF07059 EDR2_C 464-668 aa

XP_057766609.1

680 aa

340

680

START

EDR2_C

PF01852 START 196-351 aa PF07059 EDR2_C 463-667 aa

XP_057766610.1

633 aa

316

633

START

EDR2_C

PF01852 START 149-304 aa PF07059 EDR2_C 416-620 aa

XP_057766611.1

615 aa

308

615

START

EDR2_C

PF01852 START 131-286 aa PF07059 EDR2_C 398-602 aa

XP_057766612.1

614 aa

307

614

START

EDR2_C

PF01852 START 130-285 aa PF07059 EDR2_C 397-601 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057766604.1`	Pfam	`PF00169`	PH	Domain	6	111	1.7e-07	32.4	PH domain
`XP_057766604.1`	Pfam	`PF01852`	START	Domain	222	377	2.1e-23	83.5	START domain
`XP_057766604.1`	Pfam	`PF07059`	EDR2_C	Domain	489	693	3e-74	250.2	Protein ENHANCED DISEASE RESISTANCE 2, C-terminal
`XP_057766605.1`	Pfam	`PF00169`	PH	Domain	6	111	1.7e-07	32.4	PH domain
`XP_057766605.1`	Pfam	`PF01852`	START	Domain	222	377	2.1e-23	83.5	START domain
`XP_057766605.1`	Pfam	`PF07059`	EDR2_C	Domain	489	693	3e-74	250.2	Protein ENHANCED DISEASE RESISTANCE 2, C-terminal
`XP_057766606.1`	Pfam	`PF00169`	PH	Domain	6	111	1.7e-07	32.4	PH domain
`XP_057766606.1`	Pfam	`PF01852`	START	Domain	222	377	2.1e-23	83.5	START domain
`XP_057766606.1`	Pfam	`PF07059`	EDR2_C	Domain	488	692	3e-74	250.2	Protein ENHANCED DISEASE RESISTANCE 2, C-terminal
`XP_057766607.1`	Pfam	`PF00169`	PH	Domain	6	111	1.8e-07	32.4	PH domain
`XP_057766607.1`	Pfam	`PF01852`	START	Domain	221	376	2.1e-23	83.5	START domain
`XP_057766607.1`	Pfam	`PF07059`	EDR2_C	Domain	488	692	3e-74	250.2	Protein ENHANCED DISEASE RESISTANCE 2, C-terminal
`XP_057766608.1`	Pfam	`PF01852`	START	Domain	197	352	1.7e-23	83.8	START domain
`XP_057766608.1`	Pfam	`PF07059`	EDR2_C	Domain	464	668	2.5e-74	250.4	Protein ENHANCED DISEASE RESISTANCE 2, C-terminal
`XP_057766609.1`	Pfam	`PF01852`	START	Domain	196	351	1.7e-23	83.8	START domain
`XP_057766609.1`	Pfam	`PF07059`	EDR2_C	Domain	463	667	2.5e-74	250.4	Protein ENHANCED DISEASE RESISTANCE 2, C-terminal
`XP_057766610.1`	Pfam	`PF01852`	START	Domain	149	304	1.9e-23	83.6	START domain
`XP_057766610.1`	Pfam	`PF07059`	EDR2_C	Domain	416	620	2.4e-74	250.5	Protein ENHANCED DISEASE RESISTANCE 2, C-terminal
`XP_057766611.1`	Pfam	`PF01852`	START	Domain	131	286	1.8e-23	83.7	START domain
`XP_057766611.1`	Pfam	`PF07059`	EDR2_C	Domain	398	602	2.3e-74	250.5	Protein ENHANCED DISEASE RESISTANCE 2, C-terminal
`XP_057766612.1`	Pfam	`PF01852`	START	Domain	130	285	1.8e-23	83.7	START domain
`XP_057766612.1`	Pfam	`PF07059`	EDR2_C	Domain	397	601	2.3e-74	250.5	Protein ENHANCED DISEASE RESISTANCE 2, C-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

9 records

下载 cDNA FASTA

XM_057910622.1
AAAGATTTTGACACGACACCGCGGCGAATGTCTCTCTCTCTCAAGCTCCTGTCTCTCTCTCTAAAGCTTTCATAATTTGGAGAAGAAGATCGTAATCCATCGCTGGCACATTTTCTAGGATGATCATGGAAAATTCCGGTGAATGTTTTATGGATGCATGCGCTCTTTTCTGTTTGTAACATTTCGGAATTTTAGGGGTTGTTCCATGACTTAAGAGCTCGAGCGACATAGATTTTGTTGAATTCTCGAAATAAGGAGCT...

XM_057910623.1
ATTTTCTTTTTTACGTTCATAATGCGCGCAGTTATACATATATTATGTGCGCGCGGAAATTCGGAGCATTAGATACATATATGTTATTGCATTGTAACCTGTGGATATTTGGCGTTGCAGAATTTGGAGAAGAAGATCGTAATCCATCGCTGGCACATTTTCTAGGATGATCATGGAAAATTCCGGTGAATGTTTTATGGATGCATGCGCTCTTTTCTGTTTGTAACATTTCGGAATTTTAGGGGTTGTTCCATGACTTA...

CDS

9 records

下载 CDS FASTA

LOC130987059
ATGCGGAGATCGAGGGTGGTCCATGAAGGATGGATGGTGAGGTATGGACGCAGGAAGATTGGGAGATCATATATTCACATGCGATATTTTGTGCTTGAGTCTCGATTTTTGGCCTATTACAAGAAGAAGCCCCAAGATGGCGTGATGGTTTACGTTCTGTCTGTTTACAACAAGAAAGATAGTTCCAATCGGATGACGATGGCAGCTTACAGCATTCAGGAGGCTCTCAGTTGGAAAGAAAAACTTGAATCTATTATTGA...

Protein

9 records

下载 Protein FASTA

XP_057766604.1
MRRSRVVHEGWMVRYGRRKIGRSYIHMRYFVLESRFLAYYKKKPQDGVVPVKTLLIDGNCRVEDQGVKTHHGHMVYVLSVYNKKDSSNRMTMAAYSIQEALSWKEKLESIIDQQQGAHSTHGNKYYSFEYRYGLDNGRNASSSDRDAAEDDDDDCRPDSPHRTIGNGPPESVLDWTDELDSNLPNQNYNSQAFSRKHWRLLQCQNGLRIFEELLEVDLLPKSCSKAMKAVGIVEATCEETFELIMRMDATRCEWDCSFQY...

XP_057766605.1
MRRSRVVHEGWMVRYGRRKIGRSYIHMRYFVLESRFLAYYKKKPQDGVVPVKTLLIDGNCRVEDQGVKTHHGHMVYVLSVYNKKDSSNRMTMAAYSIQEALSWKEKLESIIDQQQGAHSTHGNKYYSFEYRYGLDNGRNASSSDRDAAEDDDDDCRPDSPHRTIGNGPPESVLDWTDELDSNLPNQNYNSQAFSRKHWRLLQCQNGLRIFEELLEVDLLPKSCSKAMKAVGIVEATCEETFELIMRMDATRCEWDCSFQY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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