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Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G003589

染色体: Chr05 坐标: 47968911-47973364 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G003589
名称SmilChr05G003589
描述probable methyltransferase PMT20
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向47968911 - 47973364 / -

ID 对照

NCBI Gene IDLOC130987086
GeneID130987086
locus_tag-
NCBI NameLOC130987086
原始查询SmilChr05G003589

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述probable methyltransferase PMT20
产物probable methyltransferase PMT20
ArabidopsisAT1G31850 (AT1G31850)
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840075]
identity=73.2; qcov=1.01; evalue=0; confidence=high
RiceOs06g0103900
-
identity=47.6; qcov=0.91; evalue=0; confidence=high
GOGO:0005737 (cytoplasm); GO:0005768 (endosome); GO:0005802 (trans-Golgi network); GO:0008168 (methyltransferase activity)
KEGG-
PfamPF03141 (Methyltransf_29); PF08241 (Methyltransf_11)
InterPro-
eggNOG-
NRGeneID:130987086

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Golgi apparatus 高尔基体 1.00000 XP_057766671.1
2 Nucleus 细胞核 0.00000 XP_057766671.1
3 Chromosome 染色体 0.00000 XP_057766671.1
4 Centromere 着丝粒 0.00000 XP_057766671.1
5 Chromatin 染色质 0.00000 XP_057766671.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:47969229 C T EMS_canonical_SNV CDS_variant 4 B104,B28,C82,D1
Chr5:47969237 C T EMS_canonical_SNV CDS_variant 2 B118,C25
Chr5:47969530 G A EMS_canonical_SNV CDS_variant 3 B30,B4,B64
Chr5:47969691 G A EMS_canonical_SNV CDS_variant 1 B100
Chr5:47969718 G A EMS_canonical_SNV CDS_variant 1 B48
Chr5:47969893 G A EMS_canonical_SNV CDS_variant 1 B112
Chr5:47969926 G A EMS_canonical_SNV CDS_variant 4 A13,B139,C35,C4
Chr5:47969937 G A EMS_canonical_SNV CDS_variant 1 B75
Chr5:47970100 C T EMS_canonical_SNV CDS_variant 4 B112,B38,B39,B44
Chr5:47970138 G A EMS_canonical_SNV CDS_variant 1 B64
Chr5:47970174 G A EMS_canonical_SNV CDS_variant 2 B118,C25
Chr5:47970948 T TA 1bp_insertion frameshift_variant 2 B118,C25

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057766671.1
598 aa
N
1
299
598
Methyltransf_29
Methyltransf_11
C
PF03141 Methyltransf_29 80-587 aa PF08241 Methyltransf_11 199-292 aa
XP_057766672.1
598 aa
N
1
299
598
Methyltransf_29
Methyltransf_11
C
PF03141 Methyltransf_29 80-587 aa PF08241 Methyltransf_11 199-292 aa
XP_057766673.1
598 aa
N
1
299
598
Methyltransf_29
Methyltransf_11
C
PF03141 Methyltransf_29 80-587 aa PF08241 Methyltransf_11 199-292 aa
XP_057766675.1
598 aa
N
1
299
598
Methyltransf_29
Methyltransf_11
C
PF03141 Methyltransf_29 80-587 aa PF08241 Methyltransf_11 199-292 aa
XP_057766676.1
598 aa
N
1
299
598
Methyltransf_29
Methyltransf_11
C
PF03141 Methyltransf_29 80-587 aa PF08241 Methyltransf_11 199-292 aa
XP_057766677.1
598 aa
N
1
299
598
Methyltransf_29
Methyltransf_11
C
PF03141 Methyltransf_29 80-587 aa PF08241 Methyltransf_11 199-292 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057766671.1 Pfam PF03141 Methyltransf_29 Family 80 587 3.1e-215 716.3 Putative S-adenosyl-L-methionine-dependent methyltransferase
XP_057766671.1 Pfam PF08241 Methyltransf_11 Domain 199 292 1.2e-08 36.2 Methyltransferase domain
XP_057766672.1 Pfam PF03141 Methyltransf_29 Family 80 587 3.1e-215 716.3 Putative S-adenosyl-L-methionine-dependent methyltransferase
XP_057766672.1 Pfam PF08241 Methyltransf_11 Domain 199 292 1.2e-08 36.2 Methyltransferase domain
XP_057766673.1 Pfam PF03141 Methyltransf_29 Family 80 587 3.1e-215 716.3 Putative S-adenosyl-L-methionine-dependent methyltransferase
XP_057766673.1 Pfam PF08241 Methyltransf_11 Domain 199 292 1.2e-08 36.2 Methyltransferase domain
XP_057766675.1 Pfam PF03141 Methyltransf_29 Family 80 587 3.1e-215 716.3 Putative S-adenosyl-L-methionine-dependent methyltransferase
XP_057766675.1 Pfam PF08241 Methyltransf_11 Domain 199 292 1.2e-08 36.2 Methyltransferase domain
XP_057766676.1 Pfam PF03141 Methyltransf_29 Family 80 587 3.1e-215 716.3 Putative S-adenosyl-L-methionine-dependent methyltransferase
XP_057766676.1 Pfam PF08241 Methyltransf_11 Domain 199 292 1.2e-08 36.2 Methyltransferase domain
XP_057766677.1 Pfam PF03141 Methyltransf_29 Family 80 587 3.1e-215 716.3 Putative S-adenosyl-L-methionine-dependent methyltransferase
XP_057766677.1 Pfam PF08241 Methyltransf_11 Domain 199 292 1.2e-08 36.2 Methyltransferase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA
XM_057910689.1
AAAAGAACATCATCATTCATCAATGCCAAAACAGCAATTAGATTCAGTAACAACAGTAAAATCACGATTGAAAAATCTGTTGTACACCAATAAATCTTAATTAATTCTGCCCTTTTCCATTGGATTTCCCCACTGTCGCACTCGCACTCGCACTCGCACAGTCGATTTTTTCCAAAAATTCCCTTGCTTCACGTTCCATCATTTTCACAAAGGAACCAACTAGCAGCTCACTCAACAAGGGGCAGAGAGTGAGAGAGTCG...
XM_057910688.1
AGTGTTATGTCGGAGATTATGGTTTTTCAAAGTTCATAAAGTCTGTTAATAATGGCATCTTCATAAGTCCCTGTTCTCTCTCTCTATGCATCAAGATAGAACCACCCTTTGAAACCCTTTGAGCTTCTAGTTTTTATGCTTAGAGTCGATTGTAGAAAGAGCCCAACAATATGAAACCTGAAGAGGGGAAAAATCAACCAGATAAGAGTTCTAGGACGGTATCAACGGCACTAGTGCTTCTTGTGCTGAGTGGGATATCA...

CDS

6 records

下载 CDS FASTA
LOC130987086
ATGAAACCTGAAGAGGGGAAAAATCAACCAGATAAGAGTTCTAGGACGGTATCAACGGCACTAGTGCTTCTTGTGCTGAGTGGGATATCATTCTATCTTGGTGGGATTTTTTGTTCACAAAATTACAGATATGGCATGCTGGATATTGGCAATGTGATTCAATCTTCGAACACAGTAGCTATATTGCCTTTCCAAATCAAAGCTGTTACGTTTCCTGAATGTGAATCGAGTTTTCAGGATTACACACCATGCACTGACCC...
LOC130987086
ATGAAACCTGAAGAGGGGAAAAATCAACCAGATAAGAGTTCTAGGACGGTATCAACGGCACTAGTGCTTCTTGTGCTGAGTGGGATATCATTCTATCTTGGTGGGATTTTTTGTTCACAAAATTACAGATATGGCATGCTGGATATTGGCAATGTGATTCAATCTTCGAACACAGTAGCTATATTGCCTTTCCAAATCAAAGCTGTTACGTTTCCTGAATGTGAATCGAGTTTTCAGGATTACACACCATGCACTGACCC...

Protein

6 records

下载 Protein FASTA
XP_057766671.1
MKPEEGKNQPDKSSRTVSTALVLLVLSGISFYLGGIFCSQNYRYGMLDIGNVIQSSNTVAILPFQIKAVTFPECESSFQDYTPCTDPKRWKRYQRPRLSFLERHCPPVLERKECLVPPPDGYKSPIRWPKSRDVCWYRNVPYDWINKQKSNQHWLRKEGEKFFFPGGGTMFPKGVSHYVDLMQDLIPAMKNGTVRTAIDTGCGVASWGGDLLDRGILTVSLAPRDNHEAQVQFALERGIPAMLGIISTQRLPFPSNSFDM...
XP_057766672.1
MKPEEGKNQPDKSSRTVSTALVLLVLSGISFYLGGIFCSQNYRYGMLDIGNVIQSSNTVAILPFQIKAVTFPECESSFQDYTPCTDPKRWKRYQRPRLSFLERHCPPVLERKECLVPPPDGYKSPIRWPKSRDVCWYRNVPYDWINKQKSNQHWLRKEGEKFFFPGGGTMFPKGVSHYVDLMQDLIPAMKNGTVRTAIDTGCGVASWGGDLLDRGILTVSLAPRDNHEAQVQFALERGIPAMLGIISTQRLPFPSNSFDM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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