Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G003616`

染色体: Chr05 坐标: 48291966-48295838 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G003616`
名称	SmilChr05G003616
描述	uncharacterized SmilChr05G003616
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	48291966 - 48295838 / `+`

ID 对照

NCBI Gene ID	`LOC130987107`
GeneID	`130987107`
locus_tag	`-`
NCBI Name	`LOC130987107`
原始查询	`SmilChr05G003616`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transglutaminase family protein [Source:NCBI gene (formerly Entrezgene);Acc:827654]; symbol=AT4G19160; hit=AT4G19160; species=arabidopsis; confidence=high
产物	transglutaminase family protein [Source:NCBI gene (formerly Entrezgene);Acc:827654]; symbol=AT4G19160; hit=AT4G19160; species=arabidopsis; confidence=high
Arabidopsis	`AT4G19160` (AT4G19160) transglutaminase family protein [Source:NCBI gene (formerly Entrezgene);Acc:827654] identity=63.5; qcov=0.997; evalue=2.98e-158; confidence=high
Rice	`-` -
GO	-
KEGG	-
Pfam	PF13369 (Transglut_core2); PF13371 (TPR_9)
InterPro	-
eggNOG	-
NR	GeneID:130987107

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057766711.1`
2	Cytoplasm	细胞质	0.60000	`XP_057766713.1`
3	Chloroplast stroma	叶绿体基质	0.60000	`XP_057766711.1`
4	Cytosol	细胞质基质	0.20000	`XP_057766713.1`
5	Peroxisome	过氧化物酶体	0.20000	`XP_057766713.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:48292947`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B19,B47,B76,C81
`Chr5:48292979`	`AGG`	`A`	2bp_deletion	frameshift_variant	8	B118,B19,B21,B47,B76,C18,C54,C81
`Chr5:48292990`	`C`	`CAT`	2bp_insertion	frameshift_variant	8	B118,B19,B21,B47,B76,C18,C54,C81
`Chr5:48292997`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B19,B76,C81
`Chr5:48293000`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B19,B76,C81
`Chr5:48293037`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B1,B126,B19,B89
`Chr5:48293739`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B115,B119,B25,B82
`Chr5:48293761`	`ATG`	`A`	2bp_deletion	frameshift_variant	39	A1,A25,A6,B1,B110,B115,B132,B14,B18,B25,B27,B40,B5,B50,B72,B76,B78,B80,B82,B83,B84,B91,B93,B95,C16,C27,C35,C46,C48,C49,C61,C65,C81,C83,C9,D2,D3,D5,D7
`Chr5:48293764`	`C`	`CA`	1bp_insertion	frameshift_variant	39	A1,A25,A6,B1,B110,B115,B132,B14,B18,B25,B27,B40,B5,B50,B72,B76,B78,B80,B82,B83,B84,B91,B93,B95,C16,C27,C35,C46,C48,C49,C61,C65,C81,C83,C9,D2,D3,D5,D7
`Chr5:48293766`	`C`	`CT`	1bp_insertion	frameshift_variant	45	A1,A11,A25,A6,B1,B110,B115,B126,B132,B14,B18,B25,B27,B40,B42,B5,B50,B66,B7,B72,B76,B78,B80,B82,B83,B84,B91,B93,B95,C16,C27,C35,C46,C48,C49,C61,C64,C81,C83,C9,D2,D3,D5,D6,D7
`Chr5:48293798`	`AT`	`A`	1bp_deletion	frameshift_variant	68	A1,A11,A14,A2,A25,A3,A6,B1,B104,B105,B110,B112,B115,B120,B122,B126,B132,B14,B18,B30,B4,B40,B42,B5,B50,B51,B54,B66,B7,B72,B78,B79,B80,B82,B83,B84,B87,B91,B93,B94,B95,C13,C15,C16,C21,C23,C27,C28,C38,C45,C46,C48,C49,C50,C51,C54,C57,C61,C63,C64,C67,C81,C82,C83,C9,D2,D3,D5
`Chr5:48293801`	`A`	`AG`	1bp_insertion	frameshift_variant	70	A1,A11,A14,A2,A25,A3,A6,B1,B104,B105,B110,B112,B115,B120,B122,B126,B132,B135,B14,B17,B18,B30,B4,B40,B42,B5,B50,B51,B54,B66,B7,B72,B78,B79,B80,B82,B83,B84,B87,B91,B93,B94,B95,C13,C15,C16,C21,C23,C27,C28,C38,C45,C46,C48,C49,C50,C51,C54,C57,C61,C63,C64,C67,C81,C82,C83,C9,D2,D3,D5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057766711.1

441 aa

220

441

Transglut_core2

TPR_9

PF13369 Transglut_core2 153-306 aa PF13371 TPR_9 352-408 aa

XP_057766712.1

375 aa

188

375

Transglut_core2

PF13369 Transglut_core2 153-306 aa

XP_057766713.1

360 aa

180

360

Transglut_core2

TPR_9

PF13369 Transglut_core2 72-225 aa PF13371 TPR_9 271-327 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057766711.1`	Pfam	`PF13369`	Transglut_core2	Family	153	306	1.8e-14	54.2	Transglutaminase-like superfamily
`XP_057766711.1`	Pfam	`PF13371`	TPR_9	Repeat	352	408	5.2e-09	36.7	Tetratricopeptide repeat
`XP_057766712.1`	Pfam	`PF13369`	Transglut_core2	Family	153	306	1.3e-14	54.7	Transglutaminase-like superfamily
`XP_057766713.1`	Pfam	`PF13369`	Transglut_core2	Family	72	225	1.2e-14	54.8	Transglutaminase-like superfamily
`XP_057766713.1`	Pfam	`PF13371`	TPR_9	Repeat	271	327	3.8e-09	37.2	Tetratricopeptide repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057910728.1
TCATGGGCATAAAAGACAAGAACATGAACACAAAATCGTGTCTTTCTGAACGAACACCGTCTTGTATTAATTACCTGATTCCAATTTCCAACCTATTCACATTTTGGCTTTTTTTGAAGAAAATTTAAAGATAAAATTCTATTTTCAGAGCAGAGTCCCTTACCTTGATTTCATACACTGTTTTCCGCAACAATATCAGACAGAAATTTGTTGTATGTGTACCTAGTGAGAGAGAGAGAGAGATTAAAAACTAAAAAGTG...

XM_057910729.1
ACAAGAACATGAACACAAAATCGTGTCTTTCTGAACGAACACCGTCTTGTATTAATTACCTGATTCCAATTTCCAACCTATTCACATTTTGGCTTTTTTTGAAGAAAATTTAAAGATAAAATTCTATTTTCAGAGCAGAGTCCCTTACCTTGATTTCATACACTGTTTTCCGCAACAATATCAGACAGAAATTTGTTGTATGTGTACCTAGTGAGAGAGAGAGAGAGATTAAAAACTAAAAAGTGTAGTTGGGTTTGGAT...

CDS

3 records

下载 CDS FASTA

LOC130987107
ATGCTGTCTGCTTCATTGAGTAATCAGCAGATGACTCTGCCTTGTAGCAGGTATGATTTTGGTGGATGTTGGATTGATATTGGTAAAGGGAAGAGTGCTGCTACCACCAGAAATGCTACAGTCAAGAAGAAGAGGTTGAGCATTCCACCTCTGGCTTCTTCTGCTACCTTAGATCACTCTCCTAATTCCTCGAGATCCGATTTCTATAAGGAGGTGCTTGCATCTGCTAGAGACAAATTTACAATGGAGATATCTTTCCA...

Protein

3 records

下载 Protein FASTA

XP_057766711.1
MLSASLSNQQMTLPCSRYDFGGCWIDIGKGKSAATTRNATVKKKRLSIPPLASSATLDHSPNSSRSDFYKEVLASARDKFTMEISFQSKDKDISLAKALLYVAAEDEAFLAFNREMDARSIHHERKDTSSLLDAQGWDSVESMPMAGKNINGWLAELDTIANEVKAELVSREIGCDMGEVLDAVNKVLLEYRGLKRLPVLVDSKCSYLHSALSSGGASAILLSVIYIEVCQRLNLTIVGSRVGEDFLIWPPTGNPEELFK...

XP_057766712.1
MLSASLSNQQMTLPCSRYDFGGCWIDIGKGKSAATTRNATVKKKRLSIPPLASSATLDHSPNSSRSDFYKEVLASARDKFTMEISFQSKDKDISLAKALLYVAAEDEAFLAFNREMDARSIHHERKDTSSLLDAQGWDSVESMPMAGKNINGWLAELDTIANEVKAELVSREIGCDMGEVLDAVNKVLLEYRGLKRLPVLVDSKCSYLHSALSSGGASAILLSVIYIEVCQRLNLTIVGSRVGEDFLIWPPTGNPEELFK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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