当前解析结果
SmilChr05G003646| 统一新 Gene ID | SmilChr05G003646 |
|---|---|
| 名称 | SmilChr05G003646 |
| 描述 | uncharacterized SmilChr05G003646 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 48904336 - 48906775 / - |
| NCBI Gene ID | LOC130987132 |
|---|---|
| GeneID | 130987132 |
| locus_tag | - |
| NCBI Name | LOC130987132 |
| 原始查询 | SmilChr05G003646 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os04g0191000; species=rice; confidence=low |
| 产物 | hit=Os04g0191000; species=rice; confidence=low |
| Arabidopsis | AT3G29750 (AT3G29750)Eukaryotic aspartyl protease family protein [Source:NCBI gene (formerly Entrezgene);Acc:822661] identity=27.9; qcov=0.203; evalue=6.2e-11; confidence=weak |
| Rice | Os04g0191000- identity=28.9; qcov=0.967; evalue=5.54e-68; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF02160 (Peptidase_A3); PF03732 (PEG10_N-capsid); PF08284 (RVP_2); PF13650 (Asp_protease_2); PF13975 (gag-asp_proteas); PF30863 (PRO_PEG10-RTL1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987132 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057766739.1 |
| 2 | Nucleus | 细胞核 | 0.80000 | XP_057766739.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057766739.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057766739.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057766739.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:48904344 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C44 |
Chr5:48904385 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B19,C64,C66 |
Chr5:48904396 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
Chr5:48904404 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B51,C85 |
Chr5:48904419 |
GC |
G |
1bp_deletion | frameshift_variant | 3 | B24,C2,C45 |
Chr5:48904419 |
GC |
G |
1bp_deletion | CDS_variant | 3 | B24,C2,C45 |
Chr5:48904432 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A13,A18,B64 |
Chr5:48904434 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C31 |
Chr5:48904442 |
C |
T |
EMS_canonical_SNV | stop_gained | 2 | B59,B98 |
Chr5:48904442 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B59,B98 |
Chr5:48904491 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B95 |
Chr5:48904587 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B130,B136,C33 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057766739.1PF03732
PEG10_N-capsid 82-153 aa
PF13650
Asp_protease_2 407-491 aa
PF13975
gag-asp_proteas 407-493 aa
PF02160
Peptidase_A3 411-492 aa
PF08284
RVP_2 412-494 aa
PF30863
PRO_PEG10-RTL1 414-509 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057766739.1 |
Pfam | PF03732 |
PEG10_N-capsid | Domain | 82 | 153 | 2.3e-10 | 41.4 | Retrotransposon-derived protein PEG10, N-terminal capsid-like domain |
XP_057766739.1 |
Pfam | PF13650 |
Asp_protease_2 | Domain | 407 | 491 | 2.8e-08 | 35.0 | Aspartyl protease |
XP_057766739.1 |
Pfam | PF13975 |
gag-asp_proteas | Domain | 407 | 493 | 4.3e-08 | 34.3 | gag-polyprotein putative aspartyl protease |
XP_057766739.1 |
Pfam | PF02160 |
Peptidase_A3 | Family | 411 | 492 | 3e-06 | 27.6 | Cauliflower mosaic virus peptidase (A3) |
XP_057766739.1 |
Pfam | PF08284 |
RVP_2 | Domain | 412 | 494 | 2.1e-14 | 54.2 | Retroviral aspartyl protease |
XP_057766739.1 |
Pfam | PF30863 |
PRO_PEG10-RTL1 | Domain | 414 | 509 | 6e-13 | 49.9 | PEG10/RTL1 protease domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。