Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G003647`

染色体: Chr05 坐标: 48907629-48912151 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G003647`
名称	SmilChr05G003647
描述	pentatricopeptide repeat-containing protein At1g79490, mitochondrial
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	48907629 - 48912151 / `+`

ID 对照

NCBI Gene ID	`LOC130987133`
GeneID	`130987133`
locus_tag	`-`
NCBI Name	`LOC130987133`
原始查询	`SmilChr05G003647`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At1g79490, mitochondrial
产物	pentatricopeptide repeat-containing protein At1g79490%2C mitochondrial
Arabidopsis	`AT1G79490` (EMB2217) Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:844287] identity=79.4; qcov=0.945; evalue=0; confidence=high
Rice	`Os04g0612800` - identity=61.6; qcov=0.919; evalue=0; confidence=high
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro	-
eggNOG	-
NR	GeneID:130987133

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057766740.1`
2	Nucleus	细胞核	0.00000	`XP_057766740.1`
3	Chromosome	染色体	0.00000	`XP_057766740.1`
4	Centromere	着丝粒	0.00000	`XP_057766740.1`
5	Chromatin	染色质	0.00000	`XP_057766740.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:48908115`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B12,B28,B42,B43,D4
`Chr5:48908368`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B44,C24,C3
`Chr5:48908430`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B28
`Chr5:48908509`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B37,C38
`Chr5:48908725`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C35
`Chr5:48908877`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B101,B132,B68,D11
`Chr5:48908973`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A10,B139,B37,C38
`Chr5:48909004`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B12,B28,B42,B43,D4
`Chr5:48909190`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B69,B75,B9,C86
`Chr5:48909340`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A18,C1,C43,C76
`Chr5:48909349`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B12,B28,B42,B43,D4
`Chr5:48909385`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A20,C15

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057766740.1

802 aa

401

802

TPR_24

PPR_long

PPR_3

PPR_2

PPR

PPR_3

PPR_1

PPR

TPR_24

PPR

PPR_3

PPR

PPR_long

PPR_3

PPR

PPR_2

TPR_24

PPR

PPR_2

PPR_3

PPR

PF23276 TPR_24 208-337 aa PF17177 PPR_long 209-362 aa PF13812 PPR_3 230-281 aa PF13041 PPR_2 241-289 aa PF01535 PPR 244-273 aa PF13812 PPR_3 264-324 aa PF12854 PPR_1 271-304 aa PF01535 PPR 279-307 aa PF23276 TPR_24 313-389 aa PF01535 PPR 316-343 aa PF13812 PPR_3 336-389 aa PF01535 PPR 349-378 aa PF17177 PPR_long 358-502 aa PF13812 PPR_3 369-426 aa PF01535 PPR 385-413 aa PF13041 PPR_2 385-426 aa PF23276 TPR_24 386-493 aa PF01535 PPR 418-447 aa PF13041 PPR_2 419-464 aa PF13812 PPR_3 439-481 aa PF01535 PPR 453-482 aa

XP_057766741.1

802 aa

401

802

TPR_24

PPR_long

PPR_3

PPR_2

PPR

PPR_3

PPR_1

PPR

TPR_24

PPR

PPR_3

PPR

PPR_long

PPR_3

PPR

PPR_2

TPR_24

PPR

PPR_2

PPR_3

PPR

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057766740.1`	Pfam	`PF23276`	TPR_24	Repeat	208	337	5.5e-28	98.2	Pentatricopeptide repeat-containing protein
`XP_057766740.1`	Pfam	`PF17177`	PPR_long	Repeat	209	362	1.7e-25	90.4	Pentacotripeptide-repeat region of PRORP
`XP_057766740.1`	Pfam	`PF13812`	PPR_3	Repeat	230	281	4.3e-33	113.9	Pentatricopeptide repeat domain
`XP_057766740.1`	Pfam	`PF13041`	PPR_2	Repeat	241	289	7.9e-53	177.1	PPR repeat family
`XP_057766740.1`	Pfam	`PF01535`	PPR	Repeat	244	273	3.8e-39	130.9	PPR repeat
`XP_057766740.1`	Pfam	`PF13812`	PPR_3	Repeat	264	324	4.3e-33	113.9	Pentatricopeptide repeat domain
`XP_057766740.1`	Pfam	`PF12854`	PPR_1	Repeat	271	304	9.4e-35	118.8	PPR repeat
`XP_057766740.1`	Pfam	`PF01535`	PPR	Repeat	279	307	3.8e-39	130.9	PPR repeat
`XP_057766740.1`	Pfam	`PF23276`	TPR_24	Repeat	313	389	5.5e-28	98.2	Pentatricopeptide repeat-containing protein
`XP_057766740.1`	Pfam	`PF01535`	PPR	Repeat	316	343	3.8e-39	130.9	PPR repeat
`XP_057766740.1`	Pfam	`PF13812`	PPR_3	Repeat	336	389	4.3e-33	113.9	Pentatricopeptide repeat domain
`XP_057766740.1`	Pfam	`PF01535`	PPR	Repeat	349	378	3.8e-39	130.9	PPR repeat
`XP_057766740.1`	Pfam	`PF17177`	PPR_long	Repeat	358	502	1.7e-25	90.4	Pentacotripeptide-repeat region of PRORP
`XP_057766740.1`	Pfam	`PF13812`	PPR_3	Repeat	369	426	4.3e-33	113.9	Pentatricopeptide repeat domain
`XP_057766740.1`	Pfam	`PF01535`	PPR	Repeat	385	413	3.8e-39	130.9	PPR repeat
`XP_057766740.1`	Pfam	`PF13041`	PPR_2	Repeat	385	426	7.9e-53	177.1	PPR repeat family
`XP_057766740.1`	Pfam	`PF23276`	TPR_24	Repeat	386	493	5.5e-28	98.2	Pentatricopeptide repeat-containing protein
`XP_057766740.1`	Pfam	`PF01535`	PPR	Repeat	418	447	3.8e-39	130.9	PPR repeat
`XP_057766740.1`	Pfam	`PF13041`	PPR_2	Repeat	419	464	7.9e-53	177.1	PPR repeat family
`XP_057766740.1`	Pfam	`PF13812`	PPR_3	Repeat	439	481	4.3e-33	113.9	Pentatricopeptide repeat domain
`XP_057766740.1`	Pfam	`PF01535`	PPR	Repeat	453	482	3.8e-39	130.9	PPR repeat
`XP_057766741.1`	Pfam	`PF23276`	TPR_24	Repeat	208	337	5.5e-28	98.2	Pentatricopeptide repeat-containing protein
`XP_057766741.1`	Pfam	`PF17177`	PPR_long	Repeat	209	362	1.7e-25	90.4	Pentacotripeptide-repeat region of PRORP
`XP_057766741.1`	Pfam	`PF13812`	PPR_3	Repeat	230	281	4.3e-33	113.9	Pentatricopeptide repeat domain
`XP_057766741.1`	Pfam	`PF13041`	PPR_2	Repeat	241	289	7.9e-53	177.1	PPR repeat family
`XP_057766741.1`	Pfam	`PF01535`	PPR	Repeat	244	273	3.8e-39	130.9	PPR repeat
`XP_057766741.1`	Pfam	`PF13812`	PPR_3	Repeat	264	324	4.3e-33	113.9	Pentatricopeptide repeat domain
`XP_057766741.1`	Pfam	`PF12854`	PPR_1	Repeat	271	304	9.4e-35	118.8	PPR repeat
`XP_057766741.1`	Pfam	`PF01535`	PPR	Repeat	279	307	3.8e-39	130.9	PPR repeat
`XP_057766741.1`	Pfam	`PF23276`	TPR_24	Repeat	313	389	5.5e-28	98.2	Pentatricopeptide repeat-containing protein
`XP_057766741.1`	Pfam	`PF01535`	PPR	Repeat	316	343	3.8e-39	130.9	PPR repeat
`XP_057766741.1`	Pfam	`PF13812`	PPR_3	Repeat	336	389	4.3e-33	113.9	Pentatricopeptide repeat domain
`XP_057766741.1`	Pfam	`PF01535`	PPR	Repeat	349	378	3.8e-39	130.9	PPR repeat
`XP_057766741.1`	Pfam	`PF17177`	PPR_long	Repeat	358	502	1.7e-25	90.4	Pentacotripeptide-repeat region of PRORP
`XP_057766741.1`	Pfam	`PF13812`	PPR_3	Repeat	369	426	4.3e-33	113.9	Pentatricopeptide repeat domain
`XP_057766741.1`	Pfam	`PF01535`	PPR	Repeat	385	413	3.8e-39	130.9	PPR repeat
`XP_057766741.1`	Pfam	`PF13041`	PPR_2	Repeat	385	426	7.9e-53	177.1	PPR repeat family
`XP_057766741.1`	Pfam	`PF23276`	TPR_24	Repeat	386	493	5.5e-28	98.2	Pentatricopeptide repeat-containing protein
`XP_057766741.1`	Pfam	`PF01535`	PPR	Repeat	418	447	3.8e-39	130.9	PPR repeat
`XP_057766741.1`	Pfam	`PF13041`	PPR_2	Repeat	419	464	7.9e-53	177.1	PPR repeat family
`XP_057766741.1`	Pfam	`PF13812`	PPR_3	Repeat	439	481	4.3e-33	113.9	Pentatricopeptide repeat domain
`XP_057766741.1`	Pfam	`PF01535`	PPR	Repeat	453	482	3.8e-39	130.9	PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XR_009089581.1
GCATATTTTATTTGATTGAAAACAATCACATATTTGAATGTGATAAGCCCAAGTGATCACCTAAAGGGGTTTATTTCATTTGGGTCGTTCATTCAACCGTGCGCCGCCGCGAGCAGCCAAATTCCGATCATCTCCTTTTCCAGTTACCTCTACAAAGCAAGTTTACATGTATGCGACGGTTTCGCCCCTAAATAAACAAAGAGGTTTGGCAGCTGCAGGCAAGGATTCAGCTAACCTAGGGTTTCACATAGGGTTGAGAG...

XR_009089582.1
GCATATTTTATTTGATTGAAAACAATCACATATTTGAATGTGATAAGCCCAAGTGATCACCTAAAGGGGTTTATTTCATTTGGGTCGTTCATTCAACCGTGCGCCGCCGCGAGCAGCCAAATTCCGATCATCTCCTTTTCCAGTTACCTCTACAAAGCAAGTTTACATGTATGCGACGGTTTCGCCCCTAAATAAACAAAGAGGTTTGGCAGCTGCAGGCAAGGATTCAGCTAACCTAGGGTTTCACATAGGGTTGAGAG...

CDS

2 records

下载 CDS FASTA

LOC130987133
ATGAAGTTAAGCTGGATAAATGTTGTTTCTTCTTTGAGACAATCAAGGCATGTGCTATCCCATAACAAAAAGTTGAAGTCTTTACCAGATTCATATTTGCGCAGAATTACTGCATTTTCTGAGCGTAGTCTTGTTAGAGAGTATTGTTCTGGGAGGAATGGTAGGGAGGATTCAAATGTTTGGACTGAAGAAATAGATTACTTAGATGAGTCAGGCAGCGTTATTTACTCCGGTAAGGGAATTAGGTCGGTGGAGCCAAG...

Protein

2 records

下载 Protein FASTA

XP_057766740.1
MKLSWINVVSSLRQSRHVLSHNKKLKSLPDSYLRRITAFSERSLVREYCSGRNGREDSNVWTEEIDYLDESGSVIYSGKGIRSVEPRIDDHVMAGGVRKPIMNVSAVAKIVEVVKRWRWGPDMEAQLDKLPFVPNMTHITQALKIIEDSEAVLSLFRWGKRQPWYLPSDECYVMLFDKLNLSRDFEGIQSVFEEMVSNADASGVSSSGAYNRVLQYLAKSEKLEVTFCCFKKVQELDCKLDTQTYNALITLFLTKGLPYK...

XP_057766741.1
MKLSWINVVSSLRQSRHVLSHNKKLKSLPDSYLRRITAFSERSLVREYCSGRNGREDSNVWTEEIDYLDESGSVIYSGKGIRSVEPRIDDHVMAGGVRKPIMNVSAVAKIVEVVKRWRWGPDMEAQLDKLPFVPNMTHITQALKIIEDSEAVLSLFRWGKRQPWYLPSDECYVMLFDKLNLSRDFEGIQSVFEEMVSNADASGVSSSGAYNRVLQYLAKSEKLEVTFCCFKKVQELDCKLDTQTYNALITLFLTKGLPYK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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