Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G003697`

染色体: Chr05 坐标: 50084506-50086258 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G003697`
名称	SmilChr05G003697
描述	uncharacterized SmilChr05G003697
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	50084506 - 50086258 / `-`

ID 对照

NCBI Gene ID	`LOC130987180`
GeneID	`130987180`
locus_tag	`-`
NCBI Name	`LOC130987180`
原始查询	`SmilChr05G003697`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	UDP-Glycosyltransferase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:827687]; symbol=AT4G19460; hit=AT4G19460; species=arabidopsis; confidence=high
产物	UDP-Glycosyltransferase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:827687]; symbol=AT4G19460; hit=AT4G19460; species=arabidopsis; confidence=high
Arabidopsis	`AT4G19460` (AT4G19460) UDP-Glycosyltransferase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:827687] identity=64.2; qcov=1.03; evalue=0; confidence=high
Rice	`Os01g0653200` - identity=64.5; qcov=0.887; evalue=0; confidence=high
GO	-
KEGG	-
Pfam	PF00534 (Glycos_transf_1); PF13439 (Glyco_transf_4); PF13579 (Glyco_trans_4_4); PF13692 (Glyco_trans_1_4)
InterPro	-
eggNOG	-
NR	GeneID:130987180

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057766810.1`
2	Nucleus	细胞核	0.00000	`XP_057766810.1`
3	Chromosome	染色体	0.00000	`XP_057766810.1`
4	Centromere	着丝粒	0.00000	`XP_057766810.1`
5	Chromatin	染色质	0.00000	`XP_057766810.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:50084728`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C11,C69
`Chr5:50084759`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A22,B56,B96,C38
`Chr5:50084791`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A22,B56,B96,C38
`Chr5:50084812`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr5:50084895`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B8
`Chr5:50084896`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B8
`Chr5:50084973`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C15
`Chr5:50084980`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A21
`Chr5:50085028`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B13,B41
`Chr5:50085037`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B101,B68,C20
`Chr5:50085055`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B28
`Chr5:50085113`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B79

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057766810.1

479 aa

240

479

Glyco_transf_4

Glyco_trans_4_4

Glycos_transf_1

Glyco_trans_1_4

PF13439 Glyco_transf_4 95-274 aa PF13579 Glyco_trans_4_4 96-270 aa PF00534 Glycos_transf_1 287-444 aa PF13692 Glyco_trans_1_4 299-431 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057766810.1`	Pfam	`PF13439`	Glyco_transf_4	Domain	95	274	4.3e-21	76.4	Glycosyltransferase Family 4
`XP_057766810.1`	Pfam	`PF13579`	Glyco_trans_4_4	Domain	96	270	3.1e-10	41.3	Glycosyl transferase 4-like domain
`XP_057766810.1`	Pfam	`PF00534`	Glycos_transf_1	Domain	287	444	1.9e-19	70.6	Glycosyl transferases group 1
`XP_057766810.1`	Pfam	`PF13692`	Glyco_trans_1_4	Domain	299	431	6.8e-20	72.5	Glycosyl transferases group 1

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057910827.1
TATTTTTGAAGGTAGCATAGTATTGTTGAGAAAGTCAAATGGTGTGAAAGATAAGAAAGTCACACTATGTTCCACTTCCACTCACATGGGGCGTGAACATTGCACTAAAAGCCATTTCTTCCACCCCAAAAAACAATACGCACTTTGCTTCACTCCACGCCTAACTCCTTTCCCATAACACTCTCAACATTTCATTGATGAAAACCTTATTCTTCACCACCACCAATAACCTCACACAATGGCCTCGGCCGCCGCCGCCA...

CDS

1 records

下载 CDS FASTA

LOC130987180
ATGGCCTCGGCCGCCGCCGCCAAGCCCAAGAAACCCGCCGCCGTCAACCTCCGCTCCAACCTCGCCATCACCCTCTTCTTCATCGTAGTCTTCACCATCCCCGCCCTCCTCCTCCTCCACACCCCCTCCAACTACATCTCCACCAACCTCTGCTCCTCCGACAAGCCCTGGTCCGGCGACCTCCGCCGCGCCGAGTTCTCGTGGAACAAGCTCTCCTTCCACGGCCGCGCCCCGCCGCTGCGGATCGCCGTCTTCTCCCG...

Protein

1 records

下载 Protein FASTA

XP_057766810.1
MASAAAAKPKKPAAVNLRSNLAITLFFIVVFTIPALLLLHTPSNYISTNLCSSDKPWSGDLRRAEFSWNKLSFHGRAPPLRIAVFSRKWPTTATPGGMERHAHTLHTALARRGHDVHVFTSPPSVPLPASSSSSPVVHCHEGEPEKWRYNKAWEQYEEENRKKPFDVIHSESVALPFWLARGLQNLAVSWHGIALESVQSSIYQDLTRKSGEIMSPAFNQSLQFMIPKVLNEIRFFSHYHHHVAISDSCGEMLRDVYQIP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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