当前解析结果
SmilChr05G003703| 统一新 Gene ID | SmilChr05G003703 |
|---|---|
| 名称 | SmilChr05G003703 |
| 描述 | pollen-specific leucine-rich repeat extensin-like protein 2 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 50116329 - 50118890 / - |
| NCBI Gene ID | LOC131026084 |
|---|---|
| GeneID | 131026084 |
| locus_tag | - |
| NCBI Name | LOC131026084 |
| 原始查询 | SmilChr05G003703 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pollen-specific leucine-rich repeat extensin-like protein 2 |
| 产物 | pollen-specific leucine-rich repeat extensin-like protein 2 |
| Arabidopsis | -- |
| Rice | -- |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131026084 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057811841.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057811841.1 |
| 3 | Nucleoplasm | 核质 | 0.20000 | XP_057811841.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057811841.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057811841.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:50116356 |
G |
GA |
1bp_insertion | frameshift_variant | 1 | B8 |
Chr5:50116356 |
G |
GA |
1bp_insertion | CDS_variant | 1 | B8 |
Chr5:50116382 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A24,B7 |
Chr5:50116393 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C25 |
Chr5:50116454 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A21,B69,C14,C8,D10 |
Chr5:50116472 |
G |
A |
EMS_canonical_SNV | stop_gained | 120 | A10,A11,A15,A21,A22,A25,A3,A6,A8,B1,B100,B101,B107,B108,B111,B112,B113,B115,B118,B119,B12,B120,B124,B125,B126,B127,B130,B131,B132,B14,B140,B16,B17,B18,B2,B21,B24,B26,B27,B3,B30,B31,B32,B39,B41,B42,B43,B45,B47,B51,B52,B54,B56,B57,B59,B6,B62,B63,B64,B65,B66,B68,B69,B7,B71,B73,B74,B77,B78,B79,B8,B80,B81,B85,B87,B88,B94,B97,B98,B99,C14,C18,C2,C20,C23,C25,C27,C28,C29,C34,C36,C39,C40,C41,C43,C44,C45,C47,C48,C51,C56,C57,C58,C59,C60,C62,C63,C66,C68,C69,C7,C77,C78,C8,C81,C83,C84,C87,C9,D1 |
Chr5:50116475 |
G |
A |
EMS_canonical_SNV | stop_gained | 115 | A10,A11,A15,A21,A22,A25,A3,A6,A8,B1,B100,B101,B107,B108,B111,B112,B113,B115,B118,B119,B12,B120,B124,B125,B126,B127,B130,B131,B14,B140,B16,B17,B18,B2,B21,B26,B27,B3,B30,B31,B32,B33,B41,B42,B43,B47,B51,B52,B54,B56,B57,B59,B6,B62,B63,B64,B65,B66,B68,B69,B7,B72,B73,B74,B77,B78,B79,B8,B80,B81,B85,B88,B94,B97,B98,B99,C14,C18,C2,C20,C25,C27,C28,C29,C34,C36,C39,C40,C41,C43,C44,C45,C47,C48,C51,C56,C57,C58,C59,C60,C62,C63,C66,C68,C69,C7,C77,C78,C8,C81,C83,C84,C87,C9,D1 |
Chr5:50116488 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C2 |
Chr5:50116533 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A1,B54,B79,C87 |
Chr5:50116535 |
G |
A |
EMS_canonical_SNV | stop_gained | 6 | A15,A6,B113,B43,B79,C18 |
Chr5:50116545 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A1,B79 |
Chr5:50116570 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A15,B127,B3,C48,C7 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。