当前解析结果
SmilChr05G003707| 统一新 Gene ID | SmilChr05G003707 |
|---|---|
| 名称 | SmilChr05G003707 |
| 描述 | LRR receptor-like serine/threonine-protein kinase FEI 1 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 50141306 - 50149698 / - |
| NCBI Gene ID | LOC130987172 |
|---|---|
| GeneID | 130987172 |
| locus_tag | - |
| NCBI Name | LOC130987172 |
| 原始查询 | SmilChr05G003707 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | LRR receptor-like serine/threonine-protein kinase FEI 1 |
| 产物 | LRR receptor-like serine/threonine-protein kinase FEI 1 |
| Arabidopsis | AT1G31420 (FEI1)Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:840032] identity=73.4; qcov=0.963; evalue=0; confidence=high |
| Rice | Os03g0266800 (OsBAK1-10)- identity=70.1; qcov=0.965; evalue=0; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0033612 (receptor serine/threonine kinase binding) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987172 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057766799.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057766799.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057766799.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057766799.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057766799.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:50142503 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A2,B10,B51,B58,C76 |
Chr5:50143153 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B101,B68 |
Chr5:50143273 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:50143920 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B52 |
Chr5:50143953 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B122,B24 |
Chr5:50144204 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C20 |
Chr5:50144209 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr5:50145192 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B124,B58,B76 |
Chr5:50147115 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C23 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057766799.1PF08263
LRRNT_2 29-68 aa
PF00560
LRR_1 121-143 aa
PF00560
LRR_1 145-167 aa
PF00069
Pkinase 310-573 aa
PF07714
PK_Tyr_Ser-Thr 311-575 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057766799.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 29 | 68 | 1.5e-11 | 45.1 | Leucine rich repeat N-terminal domain |
XP_057766799.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 121 | 143 | 1.7e-11 | 42.6 | Leucine Rich Repeat |
XP_057766799.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 145 | 167 | 1.7e-11 | 42.6 | Leucine Rich Repeat |
XP_057766799.1 |
Pfam | PF00069 |
Pkinase | Domain | 310 | 573 | 1.4e-46 | 159.8 | Protein kinase domain |
XP_057766799.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 311 | 575 | 7.4e-44 | 150.7 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。