当前解析结果
SmilChr05G003717| 统一新 Gene ID | SmilChr05G003717 |
|---|---|
| 名称 | SmilChr05G003717 |
| 描述 | uncharacterized protein At4g15970-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 50297319 - 50299553 / - |
| NCBI Gene ID | LOC130987189 |
|---|---|
| GeneID | 130987189 |
| locus_tag | - |
| NCBI Name | LOC130987189 |
| 原始查询 | SmilChr05G003717 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Nucleotide-diphospho-sugar transferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:838021]; symbol=AT1G14590; hit=AT1G14590; species=arabidopsis; confidence=high |
| 产物 | Nucleotide-diphospho-sugar transferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:838021]; symbol=AT1G14590; hit=AT1G14590; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G14590 (AT1G14590)Nucleotide-diphospho-sugar transferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:838021] identity=54.3; qcov=0.697; evalue=5.2e-109; confidence=high |
| Rice | Os02g0686300- identity=53.2; qcov=0.692; evalue=5.5e-108; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF03407 (Nucleotid_trans) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987189 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 1.00000 | XP_057766820.1 |
| 2 | Golgi stack | 高尔基堆 | 0.20000 | XP_057766820.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057766820.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057766820.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057766820.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:50297684 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr5:50297685 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A21,B8,D10 |
Chr5:50298684 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A21 |
Chr5:50298761 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B135,C46 |
Chr5:50298763 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B33 |
Chr5:50298829 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B49 |
Chr5:50299171 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B21,B52 |
Chr5:50299345 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr5:50299346 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B21,B52,D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057766820.1PF03407
Nucleotid_trans 163-358 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057766820.1 |
Pfam | PF03407 |
Nucleotid_trans | Family | 163 | 358 | 1.3e-63 | 215.4 | Nucleotide-diphospho-sugar transferase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。