Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G003719`

染色体: Chr05 坐标: 50312178-50316215 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G003719`
名称	SmilChr05G003719
描述	uncharacterized SmilChr05G003719
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	50312178 - 50316215 / `-`

ID 对照

NCBI Gene ID	`LOC130987164`
GeneID	`130987164`
locus_tag	`-`
NCBI Name	`LOC130987164`
原始查询	`SmilChr05G003719`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pre-mRNA-splicing factor [Source:NCBI gene (formerly Entrezgene);Acc:6241216]; symbol=AT3G49601; hit=AT3G49601; species=arabidopsis; confidence=weak
产物	pre-mRNA-splicing factor [Source:NCBI gene (formerly Entrezgene);Acc:6241216]; symbol=AT3G49601; hit=AT3G49601; species=arabidopsis; confidence=weak
Arabidopsis	`AT3G49601` (AT3G49601) pre-mRNA-splicing factor [Source:NCBI gene (formerly Entrezgene);Acc:6241216] identity=61.8; qcov=0.152; evalue=1.96e-48; confidence=weak
Rice	`-` -
GO	-
KEGG	-
Pfam	PF08312 (cwf21)
InterPro	-
eggNOG	-
NR	GeneID:130987164

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057766789.1`
2	Nucleoplasm	核质	0.40000	`XP_057766789.1`
3	Nuclear speckle	核斑点	0.20000	`XP_057766789.1`
4	Chromosome	染色体	0.00000	`XP_057766789.1`
5	Centromere	着丝粒	0.00000	`XP_057766789.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:50312951`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:50312992`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B101,B140,B68
`Chr5:50313024`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B122,B21,B22,B52
`Chr5:50313070`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	C71
`Chr5:50313070`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C71
`Chr5:50313086`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B110,B31,B64
`Chr5:50313242`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B106,C8
`Chr5:50313605`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A18,C1,C43,C76
`Chr5:50313666`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A22
`Chr5:50314021`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C12,C3,C8
`Chr5:50314276`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B41,B44,B65,C61
`Chr5:50314383`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C82

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057766789.1

947 aa

474

947

cwf21

PF08312 cwf21 59-102 aa

XP_057766790.1

947 aa

474

947

cwf21

PF08312 cwf21 59-102 aa

XP_057766791.1

947 aa

474

947

cwf21

PF08312 cwf21 59-102 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057766789.1`	Pfam	`PF08312`	cwf21	Domain	59	102	6.7e-16	58.7	cwf21 domain
`XP_057766790.1`	Pfam	`PF08312`	cwf21	Domain	59	102	6.7e-16	58.7	cwf21 domain
`XP_057766791.1`	Pfam	`PF08312`	cwf21	Domain	59	102	6.7e-16	58.7	cwf21 domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057910807.1
CAAAAAGAAAACATCAAACCAAAAAAAAGGCCTCAGACTCACATCCAATAAAGAATGTGAAAAAGGAATGTATTTTCTTCAATCGCCCTTTGTTCGGTGAGGCAGCACAATTTCCACACACAACAACGGTTTGGGAGTAGCTGAAAACAAAGGTTACACTTGACATCCATGAAGAATGAGTTGGGGGATTTTCTTCCTCTTCTCAAATCGTAGTCATTAAAGAGAAGCGTAAAAAAAAACTTGTTATTTTGATCTCATCA...

XM_057910806.1
GAATGTATTTTCTTCAATCGCCCTTTGTTCGGTGAGGCAGCACAATTTCCACACACAACAACGGTTTGGGAGTAGCTGAAAACAAAGGTTACACTTGACATCCATGAAGAATGAGTTGGGGGATTTTCTTCCTCTTCTCAAATCGTAGTCATTAAAGAGAAGCGTAAAAAAAAACTTGTTATTTTGATCTCATCATTGGGCCCAGTCCCGTCCTAGCCCAGCCCAGCCCAACCCAACCCAATAAGCTCTTATCATTACAT...

CDS

3 records

下载 CDS FASTA

LOC130987164
ATGTATAACGGAATAGGGTTGCAGACCCCTCGGGGCTCTGGAACCAATGGCTACATCCAGTCGAACAAGTTCTTCGTGCGGCCGAAGACCAACAAAGTCATCACCGATTCGAGCAAGGGCTTCGAATCGGATCAAGGAACCGCCGGTGTCACCCGGAAAGCCAACAAGGAGATCTTGGAGCACGATAGGAAGCGTCAGATCGAGCTCAAGCTTATCGTTTTGGAGGACACGCTGAGCGATCAGGGGTATACAGAGGCCGA...

Protein

3 records

下载 Protein FASTA

XP_057766789.1
MYNGIGLQTPRGSGTNGYIQSNKFFVRPKTNKVITDSSKGFESDQGTAGVTRKANKEILEHDRKRQIELKLIVLEDTLSDQGYTEAEIAEKLDEARKSLEAKDNDEAQGGNKSRLSDKVSVTQTHQIAALKERQMENLKAALGIESEAEREQKRSEAEALNFKEILDEGEIVDTDTDQREATRKVVKKNEPGRNKKKRAKDSDSSEGSDVDVRKRTAKSSSKKQKRVSRHDSSSSGSESDSESGSDSGSESDHDKKNTRA...

XP_057766790.1
MYNGIGLQTPRGSGTNGYIQSNKFFVRPKTNKVITDSSKGFESDQGTAGVTRKANKEILEHDRKRQIELKLIVLEDTLSDQGYTEAEIAEKLDEARKSLEAKDNDEAQGGNKSRLSDKVSVTQTHQIAALKERQMENLKAALGIESEAEREQKRSEAEALNFKEILDEGEIVDTDTDQREATRKVVKKNEPGRNKKKRAKDSDSSEGSDVDVRKRTAKSSSKKQKRVSRHDSSSSGSESDSESGSDSGSESDHDKKNTRA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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