当前解析结果
SmilChr05G003722| 统一新 Gene ID | SmilChr05G003722 |
|---|---|
| 名称 | SmilChr05G003722 |
| 描述 | uncharacterized SmilChr05G003722 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 50329052 - 50333259 / - |
| NCBI Gene ID | LOC130987188 |
|---|---|
| GeneID | 130987188 |
| locus_tag | - |
| NCBI Name | LOC130987188 |
| 原始查询 | SmilChr05G003722 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | DNA repair ATPase-like protein [Source:NCBI gene (formerly Entrezgene);Acc:816978]; symbol=AT2G24420; hit=AT2G24420; species=arabidopsis; confidence=medium |
| 产物 | DNA repair ATPase-like protein [Source:NCBI gene (formerly Entrezgene);Acc:816978]; symbol=AT2G24420; hit=AT2G24420; species=arabidopsis; confidence=medium |
| Arabidopsis | AT2G24420 (AT2G24420)DNA repair ATPase-like protein [Source:NCBI gene (formerly Entrezgene);Acc:816978] identity=44.3; qcov=1.03; evalue=8.7e-120; confidence=medium |
| Rice | Os08g0519400 (BIP129)- identity=47.1; qcov=0.936; evalue=1.04e-115; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987188 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 0.80000 | XP_057766819.1 |
| 2 | Nucleus membrane | 核膜 | 0.60000 | XP_057766819.1 |
| 3 | Endoplasmic reticulum membrane | 内质网膜 | 0.40000 | XP_057766819.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057766819.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057766819.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:50329468 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B137,C31 |
Chr5:50329607 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B21,B22,B33,B52,C82 |
Chr5:50329699 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C41 |
Chr5:50329700 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A7,C48 |
Chr5:50329779 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B21,B22,B33,B52 |
Chr5:50329827 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A7,C48 |
Chr5:50329853 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A22,B132,B45,B68,C38 |
Chr5:50329855 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C61 |
Chr5:50329891 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B122,C12,D7 |
Chr5:50329899 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A21 |
Chr5:50330093 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr5:50330256 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B130,B136,B66,C33 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。