Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G003740`

染色体: Chr05 坐标: 50495084-50498493 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G003740`
名称	SmilChr05G003740
描述	uncharacterized SmilChr05G003740
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	50495084 - 50498493 / `+`

ID 对照

NCBI Gene ID	`LOC130987206`
GeneID	`130987206`
locus_tag	`-`
NCBI Name	`LOC130987206`
原始查询	`SmilChr05G003740`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	E3 ubiquitin-protein ligase, putative (DUF1644) [Source:NCBI gene (formerly Entrezgene);Acc:829268]; symbol=AT4G31410; hit=AT4G31410; species=arabidopsis; confidence=high
产物	E3 ubiquitin-protein ligase, putative (DUF1644) [Source:NCBI gene (formerly Entrezgene);Acc:829268]; symbol=AT4G31410; hit=AT4G31410; species=arabidopsis; confidence=high
Arabidopsis	`AT4G31410` (AT4G31410) E3 ubiquitin-protein ligase, putative (DUF1644) [Source:NCBI gene (formerly Entrezgene);Acc:829268] identity=54; qcov=1.05; evalue=7.5e-94; confidence=high
Rice	`Os02g0150900` - identity=51.7; qcov=0.76; evalue=3.18e-74; confidence=high
GO	-
KEGG	-
Pfam	PF07800 (DUF1644)
InterPro	-
eggNOG	-
NR	GeneID:130987206

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057766835.1`
2	Cytoplasm	细胞质	1.00000	`XP_057766835.1`
3	Cytosol	细胞质基质	0.20000	`XP_057766835.1`
4	Chromosome	染色体	0.00000	`XP_057766835.1`
5	Centromere	着丝粒	0.00000	`XP_057766835.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:50496873`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B94
`Chr5:50497041`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C2,C45
`Chr5:50497244`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B13,B8
`Chr5:50497302`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C76
`Chr5:50498046`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057766835.1

276 aa

138

276

DUF1644

PF07800 DUF1644 11-60 aa PF07800 DUF1644 66-150 aa

XP_057766836.1

275 aa

138

275

DUF1644

PF07800 DUF1644 11-60 aa PF07800 DUF1644 66-150 aa

XP_057766837.1

275 aa

138

275

DUF1644

PF07800 DUF1644 11-60 aa PF07800 DUF1644 66-150 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057766835.1`	Pfam	`PF07800`	DUF1644	Family	11	60	1.9e-56	191.5	Protein of unknown function (DUF1644)
`XP_057766835.1`	Pfam	`PF07800`	DUF1644	Family	66	150	1.9e-56	191.5	Protein of unknown function (DUF1644)
`XP_057766836.1`	Pfam	`PF07800`	DUF1644	Family	11	60	1.8e-56	191.5	Protein of unknown function (DUF1644)
`XP_057766836.1`	Pfam	`PF07800`	DUF1644	Family	66	150	1.8e-56	191.5	Protein of unknown function (DUF1644)
`XP_057766837.1`	Pfam	`PF07800`	DUF1644	Family	11	60	1.8e-56	191.5	Protein of unknown function (DUF1644)
`XP_057766837.1`	Pfam	`PF07800`	DUF1644	Family	66	150	1.8e-56	191.5	Protein of unknown function (DUF1644)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057910853.1
ATAGACTATAGAAATAGAGTAGCGCCATTGCGTGTGTGACAGTGAATGTCACCGCCTGCACTTTCTCTTTCAAGGTAAAACGCCAAAAAGTCCTCCACTCATCCACTCCACCCACCCTCAAATTCCCAAGTCTCTTTTATGCAAATTGACCCCATATATTCTCTCGACTTCCATGTTCACTTCCTCACGCTCTCTCTCCATTTTCAGCGCAACTCATTTGCCAGAAATATATTGCGACTTCTTTTCACTGCGGCCAATGG...

XM_057910852.1
AGACTATAGAAATAGAGTAGCGCCATTGCGTGTGTGACAGTGAATGTCACCGCCTGCACTTTCTCTTTCAAGGTAAAACGCCAAAAAGTCCTCCACTCATCCACTCCACCCACCCTCAAATTCCCAAGTCTCTTTTATGCAAATTGACCCCATATATTCTCTCGACTTCCATGTTCACTTCCTCACGCTCTCTCTCCATTTTCAGCGCAACTCATTTGCCAGAAATATATTGCGACTTCTTTTCACTGCGGCCAATGGAG...

CDS

3 records

下载 CDS FASTA

LOC130987206
ATGGAGGATGTTCATGTGTGTACCAACTGCGATGATGTCATATGTCCAATATGCTTGAACTTTCCTCACAATTGTGTACTCCTTCAATGCTCATCATATGAGAAAGGATGTCGGCCTTTCATATGTGGTACAGACCATTTACATTCGAATTGTTTGGACCGTTATAAAGAAGCAAATGGGTGGTTATCTGGTTCAAAATCTAGCAAACCGGCATGCCCCTTATGTCGAGGAGAAGTTGCTGGATGGACAGTGGTTGATAA...

Protein

3 records

下载 Protein FASTA

XP_057766835.1
MEDVHVCTNCDDVICPICLNFPHNCVLLQCSSYEKGCRPFICGTDHLHSNCLDRYKEANGWLSGSKSSKPACPLCRGEVAGWTVVDKARAHFDVKKRCCEEEKCPFTGSYSELQNHAEVEHPHACPSRVDPARKLDWENFQRSSELIDLLTTIHSQVSNGIILGDYVVEYEEDNSEDDEDDDFHGDEGNWWRSCVLYQIFASLGIFRNRRRSSIGDSRRGSRRDTSISDEGSVSPAEYADNADEVDGEFTGRRDLSRERA...

XP_057766836.1
MEDVHVCTNCDDVICPICLNFPHNCVLLQCSSYEKGCRPFICGTDHLHSNCLDRYKEANGWLSGSKSSKPACPLCRGEVAGWTVVDKARAHFDVKKRCCEEEKCPFTGSYSELQNHAEVEHPHACPSRVDPARKLDWENFQRSSELIDLLTTIHSQVSNGIILGDYVVEYEEDNSEDDEDDDFHGDEGNWWRSCVLYQIFASLGIFRNRRRSSIGDSRRGSRRDTSISDEGSVSPAEYADNADEVDGEFTGRRDLSRERA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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