当前解析结果
SmilChr05G003745| 统一新 Gene ID | SmilChr05G003745 |
|---|---|
| 名称 | SmilChr05G003745 |
| 描述 | uncharacterized SmilChr05G003745 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 50567442 - 50568365 / + |
| NCBI Gene ID | LOC131026092 |
|---|---|
| GeneID | 131026092 |
| locus_tag | - |
| NCBI Name | LOC131026092 |
| 原始查询 | SmilChr05G003745 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | RNA-directed DNA polymerase (reverse transcriptase)-related family protein [Source:NCBI gene (formerly Entrezgene);Acc:822013]; symbol=AT3G24255; hit=AT3G24255; species=arabidopsis; confidence=low |
| 产物 | RNA-directed DNA polymerase (reverse transcriptase)-related family protein [Source:NCBI gene (formerly Entrezgene);Acc:822013]; symbol=AT3G24255; hit=AT3G24255; species=arabidopsis; confidence=low |
| Arabidopsis | AT3G24255 (AT3G24255)RNA-directed DNA polymerase (reverse transcriptase)-related family protein [Source:NCBI gene (formerly Entrezgene);Acc:822013] identity=33.5; qcov=0.681; evalue=3.94e-36; confidence=low |
| Rice | Os11g0672600- identity=31; qcov=0.756; evalue=1.29e-29; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131026092 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057811849.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057811849.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057811849.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057811849.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057811849.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:50567482 |
TC |
T |
1bp_deletion | frameshift_variant | 9 | A3,B12,B46,B54,B88,C53,C64,C66,C80 |
Chr5:50567509 |
CT |
C |
1bp_deletion | frameshift_variant | 8 | A19,A20,B30,B32,B84,C16,C27,C83 |
Chr5:50567511 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A22,B110,B2,C9,D10 |
Chr5:50567582 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A7,B80 |
Chr5:50567633 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A14,B43,C39,C43 |
Chr5:50567635 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A7,B80 |
Chr5:50567655 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C20 |
Chr5:50567656 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C20 |
Chr5:50567690 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A10,B117 |
Chr5:50567696 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B117 |
Chr5:50567796 |
C |
T |
EMS_canonical_SNV | stop_gained | 7 | A18,B110,B124,B16,B6,B88,C67 |
Chr5:50567808 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A7,B80 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。