Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G003782`

染色体: Chr05 坐标: 51144396-51148753 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G003782`
名称	SmilChr05G003782
描述	probable protein phosphatase 2C 59
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	51144396 - 51148753 / `-`

ID 对照

NCBI Gene ID	`LOC131024843`
GeneID	`131024843`
locus_tag	`-`
NCBI Name	`LOC131024843`
原始查询	`SmilChr05G003782`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable protein phosphatase 2C 59
产物	probable protein phosphatase 2C 59
Arabidopsis	`AT4G31750` (WIN2) HOPW1-1-interacting 2 [Source:NCBI gene (formerly Entrezgene);Acc:829303] identity=74.3; qcov=1.01; evalue=5.35e-147; confidence=high
Rice	`Os02g0149800` (OsPP2C10) - identity=73.3; qcov=0.932; evalue=1e-135; confidence=high
GO	GO:0004722 (protein serine/threonine phosphatase activity); GO:0005634 (nucleus); GO:0005829 (cytosol); GO:0006470 (protein dephosphorylation); GO:0043169 (cation binding)
KEGG	-
Pfam	PF00481 (PP2C); PF13672 (PP2C_2)
InterPro	-
eggNOG	-
NR	GeneID:131024843

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057810359.1`
2	Nucleus	细胞核	0.40000	`XP_057810359.1`
3	Cytoplasm	细胞质	0.40000	`XP_057810359.1`
4	Chromosome	染色体	0.00000	`XP_057810359.1`
5	Centromere	着丝粒	0.00000	`XP_057810359.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:51144624`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C30
`Chr5:51145085`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B20,C58
`Chr5:51146005`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr5:51146118`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B27
`Chr5:51147091`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B137,B41,C31
`Chr5:51148375`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A2,B70,B82,C78
`Chr5:51148466`	`GA`	`G`	1bp_deletion	frameshift_variant	133	A1,A15,A16,A19,A2,A20,A22,A3,A5,A7,B10,B102,B103,B106,B107,B108,B109,B11,B115,B119,B120,B121,B126,B129,B131,B132,B135,B138,B14,B16,B17,B20,B21,B23,B25,B26,B27,B28,B29,B3,B32,B36,B38,B39,B40,B42,B43,B45,B47,B49,B50,B51,B53,B54,B55,B56,B58,B59,B6,B60,B69,B72,B73,B76,B78,B81,B83,B84,B87,B89,B93,B94,B95,B96,B97,B98,C10,C11,C12,C13,C14,C16,C17,C2,C20,C21,C22,C23,C24,C26,C27,C3,C34,C35,C36,C37,C39,C40,C42,C44,C45,C46,C48,C51,C53,C54,C56,C60,C63,C67,C69,C7,C72,C74,C75,C76,C77,C78,C79,C8,C81,C83,C85,C86,C87,C9,D10,D11,D3,D5,D6,D8,D9
`Chr5:51148468`	`AT`	`A`	1bp_deletion	frameshift_variant	145	A1,A11,A13,A14,A16,A18,A19,A2,A20,A21,A22,A23,A24,A25,A3,A4,A5,A6,A8,A9,B1,B100,B101,B102,B104,B105,B112,B113,B114,B117,B119,B12,B121,B122,B124,B125,B127,B128,B132,B134,B135,B136,B137,B139,B140,B15,B18,B2,B22,B24,B25,B26,B27,B28,B33,B34,B35,B36,B37,B39,B4,B44,B47,B48,B5,B52,B53,B56,B57,B6,B61,B62,B65,B66,B67,B68,B70,B71,B74,B75,B77,B78,B79,B8,B80,B82,B83,B84,B85,B87,B88,B90,B91,B92,B93,B96,C1,C12,C15,C16,C18,C19,C2,C22,C24,C30,C31,C32,C35,C37,C38,C39,C4,C40,C41,C43,C48,C50,C51,C52,C55,C56,C57,C58,C59,C6,C62,C63,C64,C65,C67,C68,C7,C70,C71,C76,C77,C78,C79,C80,C82,C84,D11,D2,D7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810359.1

310 aa

155

310

PP2C

PP2C_2

PF00481 PP2C 55-290 aa PF13672 PP2C_2 91-272 aa

XP_057810360.1

281 aa

140

281

PP2C

PP2C_2

PF00481 PP2C 45-261 aa PF13672 PP2C_2 57-243 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810359.1`	Pfam	`PF00481`	PP2C	Family	55	290	3.9e-66	224.0	Protein phosphatase 2C
`XP_057810359.1`	Pfam	`PF13672`	PP2C_2	Family	91	272	1.1e-06	29.1	Protein phosphatase 2C
`XP_057810360.1`	Pfam	`PF00481`	PP2C	Family	45	261	3.7e-63	214.3	Protein phosphatase 2C
`XP_057810360.1`	Pfam	`PF13672`	PP2C_2	Family	57	243	3.2e-07	30.9	Protein phosphatase 2C

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057954376.1
TAAGAAACTAAACGAATTTAACCAATCATTAGCTACTGCTCATCTCTCTCTCTCTCTAGCTTTTCTTGTGTATACAGATACAGATCTTCATTTCTCTTGGCTCTTCTTCCACGGCTGCGACTCATATGGCCCCTTTTAATGGCTACCGGCATTTTTCAAAATTCTTTTAATCGGAGGAATAGAGTATATTAATTCACAAGCATCTTGTTGTTTCTGCGTTTACTCATCTCGGCTTCAGAAAATAAATGGAAGAATTGGTA...

XM_057954377.1
AATTTAACCAATCATTAGCTACTGCTCATCTCTCTCTCTCTCTAGCTTTTCTTGTGTATACAGATACAGATCTTCATTTCTCTTGGCTCTTCTTCCACGGCTGCGACTCATATGGCCCCTTTTAATGGCTACCGGCATTTTTCAAAATTCTTTTAATCGGAGGAATAGAGTATATTAATTCACAAGCATCTTGTTGTTTCTGCGTTTACTCATCTCGGCTTCAGAAAATAAATGGAAGAATTGGTATGCCATTTGATTTA...

CDS

2 records

下载 CDS FASTA

LOC131024843
ATGCCATTTGATTTAAGAAAAAAAAATTCAAAGTTGTGGAGCCATAAGAGGATAAGTTATCTAAATTCAGAGATTTCACAATCTATGAAACAAGTTCGTTTCCATGACGCGCCGGTCAGCGGCGGTGGCCAAAGTCAGAATGGAAAGTTTAGCTATGGCTATGCAAGTTCTCAAGGTCATGGGGGAGCCAGAGTTGCAGAATATGTCAAGCAAAATCTTTTCAGTAATCTGATCAAGCACCCAAAGTTTATTTCTGATAC...

LOC131024843
ATGCCATTTGATTTAAGAAAAAAAAATTCAAAGTTGTGGAGCCATAAGAGGATAAGTTATCTAAATTCAGAGATTTCACAATCTATGAAACAAGTTCGTTTCCATGACGCGCCGGTCAGCGGCGGTGGCCAAAGTCAGAATGGAAAGTTTAGCTATGGCTATGCAAGTTCTCAAGGTAAAAGGTCTTCAATGGAGGATTTTTATGAGACAAGGATTGACGGTGTAGATGGGAAAGTGGTTGGTCTCTTTGGTGTCTTTGA...

Protein

2 records

下载 Protein FASTA

XP_057810359.1
MPFDLRKKNSKLWSHKRISYLNSEISQSMKQVRFHDAPVSGGGQSQNGKFSYGYASSQGKRSSMEDFYETRIDGVDGKVVGLFGVFDGHGGARVAEYVKQNLFSNLIKHPKFISDTRSAIADAYSHTDSELLKSENNEIKDAGSTASTAILVGDRLLVANVGDSRAVICRGGTAIPVSRDHKPNQTDERRRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKVDNTLEFLVLASDGLWDVVSNEEA...

XP_057810360.1
MPFDLRKKNSKLWSHKRISYLNSEISQSMKQVRFHDAPVSGGGQSQNGKFSYGYASSQGHGGARVAEYVKQNLFSNLIKHPKFISDTRSAIADAYSHTDSELLKSENNEIKDAGSTASTAILVGDRLLVANVGDSRAVICRGGTAIPVSRDHKPNQTDERRRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKVDNTLEFLVLASDGLWDVVSNEEAVSMSKAILDPEEAAKKLLQEADQRGSADN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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