Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G003788`

染色体: Chr05 坐标: 51223102-51224675 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G003788`
名称	SmilChr05G003788
描述	F-box/kelch-repeat protein At3g23880-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	51223102 - 51224675 / `-`

ID 对照

NCBI Gene ID	`LOC131024850`
GeneID	`131024850`
locus_tag	`-`
NCBI Name	`LOC131024850`
原始查询	`SmilChr05G003788`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box/kelch-repeat protein At3g23880-like
产物	F-box/kelch-repeat protein At3g23880-like
Arabidopsis	`AT3G23880` (AT3G23880) F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:821971] identity=27.6; qcov=1.09; evalue=4.71e-30; confidence=low
Rice	`Os09g0447600` - identity=33.3; qcov=0.482; evalue=8.12e-18; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF03478 (Beta-prop_KIB1-4); PF07734 (FBA_1); PF08268 (FBA_3); PF12937 (F-box-like)
InterPro	-
eggNOG	-
NR	GeneID:131024850

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057810365.1`
2	Nucleus	细胞核	0.60000	`XP_057810365.1`
3	Cytosol	细胞质基质	0.20000	`XP_057810365.1`
4	Chromosome	染色体	0.00000	`XP_057810365.1`
5	Centromere	着丝粒	0.00000	`XP_057810365.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:51223469`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A18,B62,C1,C43
`Chr5:51223478`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B16,C39,C56,C67
`Chr5:51223646`	`T`	`TGC`	2bp_insertion	frameshift_variant	73	A10,A16,A18,A24,A3,A7,B101,B102,B103,B105,B108,B11,B111,B124,B130,B131,B134,B137,B17,B20,B21,B25,B27,B3,B33,B34,B40,B45,B46,B5,B58,B62,B66,B68,B69,B70,B74,B79,B8,B80,B83,B84,B9,B90,B92,C12,C16,C22,C23,C27,C30,C33,C37,C39,C5,C55,C56,C61,C64,C66,C67,C7,C71,C74,C75,C76,C8,C80,C83,C84,C87,D4,D8
`Chr5:51223663`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B62,C1,C43
`Chr5:51223694`	`CTG`	`C`	2bp_deletion	frameshift_variant	60	A10,A16,A18,A19,A24,A3,B102,B103,B11,B111,B131,B132,B134,B137,B17,B20,B21,B27,B3,B33,B40,B45,B5,B58,B62,B68,B69,B70,B72,B79,B80,B83,B84,B9,B90,B92,C12,C22,C23,C27,C30,C33,C37,C39,C5,C55,C56,C61,C64,C66,C74,C75,C76,C8,C80,C84,C87,D4,D8,D9
`Chr5:51223698`	`A`	`AAT`	2bp_insertion	frameshift_variant	73	A10,A16,A18,A19,A24,A3,A7,B101,B102,B103,B108,B11,B111,B124,B130,B131,B132,B134,B137,B17,B20,B21,B27,B3,B33,B34,B40,B45,B46,B5,B51,B58,B61,B62,B68,B69,B70,B72,B74,B79,B8,B80,B83,B84,B9,B90,B92,C12,C22,C23,C27,C30,C33,C37,C39,C5,C55,C56,C61,C64,C66,C7,C74,C75,C76,C8,C80,C84,C87,C9,D4,D8,D9
`Chr5:51223728`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A23
`Chr5:51223736`	`AC`	`A`	1bp_deletion	frameshift_variant	88	A10,A16,A19,A24,A3,A7,B10,B100,B101,B102,B103,B105,B108,B11,B111,B124,B13,B130,B131,B132,B134,B137,B138,B139,B17,B20,B21,B25,B27,B3,B31,B33,B34,B40,B45,B46,B5,B58,B61,B62,B66,B68,B69,B70,B72,B74,B75,B79,B8,B80,B83,B84,B9,B90,B92,C1,C12,C22,C23,C25,C27,C30,C33,C37,C39,C41,C48,C49,C5,C55,C56,C61,C64,C66,C7,C71,C74,C75,C76,C8,C80,C83,C84,C87,C9,D4,D8,D9
`Chr5:51223742`	`C`	`CGT`	2bp_insertion	frameshift_variant	89	A10,A16,A19,A24,A3,A7,B10,B100,B101,B102,B103,B105,B108,B11,B111,B124,B13,B130,B131,B132,B134,B137,B138,B139,B17,B20,B21,B25,B27,B3,B31,B33,B34,B40,B45,B46,B5,B58,B61,B62,B66,B68,B69,B70,B72,B74,B75,B79,B8,B80,B83,B84,B9,B90,B92,C1,C12,C16,C22,C23,C25,C27,C30,C33,C37,C39,C41,C48,C49,C5,C55,C56,C61,C64,C66,C7,C71,C74,C75,C76,C8,C80,C83,C84,C87,C9,D4,D8,D9
`Chr5:51223749`	`TG`	`T`	1bp_deletion	frameshift_variant	79	A10,A16,A24,A3,B100,B101,B102,B103,B11,B111,B124,B130,B131,B132,B134,B137,B138,B139,B17,B20,B21,B25,B27,B3,B31,B33,B34,B40,B45,B5,B58,B61,B62,B68,B69,B70,B72,B75,B79,B8,B80,B83,B84,B9,B90,B92,C1,C12,C16,C22,C23,C25,C27,C30,C33,C37,C39,C41,C48,C49,C5,C55,C56,C61,C64,C66,C71,C74,C75,C76,C8,C80,C83,C84,C87,C9,D4,D8,D9
`Chr5:51223773`	`CT`	`C`	1bp_deletion	frameshift_variant	28	A1,A13,A3,B105,B114,B12,B126,B25,B35,B49,B51,B6,B62,B72,B81,B84,B87,B93,C16,C20,C3,C39,C42,C67,C83,C86,D1,D9
`Chr5:51223796`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B62,C43

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810365.1

366 aa

183

366

F-box-like

F-box

FBA_3

FBA_1

Beta-prop_KIB1-4

PF12937 F-box-like 12-46 aa PF00646 F-box 12-49 aa PF08268 FBA_3 86-348 aa PF07734 FBA_1 86-363 aa PF03478 Beta-prop_KIB1-4 95-294 aa

XP_057810366.1

336 aa

168

336

F-box-like

F-box

FBA_3

FBA_1

PF12937 F-box-like 12-46 aa PF00646 F-box 12-49 aa PF08268 FBA_3 86-170 aa PF07734 FBA_1 86-171 aa PF07734 FBA_1 173-333 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810365.1`	Pfam	`PF12937`	F-box-like	Domain	12	46	1.3e-09	38.3	F-box-like
`XP_057810365.1`	Pfam	`PF00646`	F-box	Domain	12	49	1.7e-11	44.2	F-box domain
`XP_057810365.1`	Pfam	`PF08268`	FBA_3	Repeat	86	348	6.4e-20	72.1	F-box associated beta propeller domain
`XP_057810365.1`	Pfam	`PF07734`	FBA_1	Repeat	86	363	2.6e-24	86.5	F-box associated beta propeller domain
`XP_057810365.1`	Pfam	`PF03478`	Beta-prop_KIB1-4	Repeat	95	294	1.7e-07	31.7	KIB1-4 beta-propeller
`XP_057810366.1`	Pfam	`PF12937`	F-box-like	Domain	12	46	1.2e-09	38.5	F-box-like
`XP_057810366.1`	Pfam	`PF00646`	F-box	Domain	12	49	1.5e-11	44.4	F-box domain
`XP_057810366.1`	Pfam	`PF08268`	FBA_3	Repeat	86	170	8.7e-14	52.0	F-box associated beta propeller domain
`XP_057810366.1`	Pfam	`PF07734`	FBA_1	Repeat	86	171	3.9e-17	63.0	F-box associated beta propeller domain
`XP_057810366.1`	Pfam	`PF07734`	FBA_1	Repeat	173	333	3.9e-17	63.0	F-box associated beta propeller domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057954382.1
TAATTATTTGTGGTCATAGAAGCTACCCAAATTACAGTCCAAATGTGCGATTAGGTTTTCTGTAGTTTCAGCGCGCATTACGGAATTTCCCGTATTTGAATTTTTCCTCTTTATCTCTACCAAACCCAAACCCTACATCCAAATTCAATTAATCCTTTCATGGCGCAATCTCGAAGAACAACTGAAATCGTACTGCCAAACGAGGTGATCATCGAAATCCTCACCTGGCTCCCAGTAAAATCTCTCTTGAAATTCAAATG...

XM_057954383.1
CTACCCAAATTACAGTCCAAATGTGCGATTAGGTTTTCTGTAGTTTCAGCGCGCATTACGGAATTTCCCGTATTTGAATTTTTCCTCTTTATCTCTACCAAACCCAAACCCTACATCCAAATTCAATTAATCCTTTCATGGCGCAATCTCGAAGAACAACTGAAATCGTACTGCCAAACGAGGTGATCATCGAAATCCTCACCTGGCTCCCAGTAAAATCTCTCTTGAAATTCAAATGCGTCTGCAGATCATGGCGAGCC...

CDS

2 records

下载 CDS FASTA

LOC131024850
ATGGCGCAATCTCGAAGAACAACTGAAATCGTACTGCCAAACGAGGTGATCATCGAAATCCTCACCTGGCTCCCAGTAAAATCTCTCTTGAAATTCAAATGCGTCTGCAGATCATGGCGAGCCCTAATTTCCAGCCAACGCTTCATCAAAGCCCACCTCCACAACTCAAAATTAGCCCCAAATTTAGCTCACGATATGCTCGCTTTTGCCTGTCGTCCAGGTAATTTTAGGCAGTGTTCGGTTAATTCCATGCTGTATGA...

Protein

2 records

下载 Protein FASTA

XP_057810365.1
MAQSRRTTEIVLPNEVIIEILTWLPVKSLLKFKCVCRSWRALISSQRFIKAHLHNSKLAPNLAHDMLAFACRPGNFRQCSVNSMLYESVSQVSDLSYPFELVENYRVMGTCNGLLLVRLNYTEVILWNPSTRTCKKLPHFGVELAEDDLLGDFGLGYDKSKDDYKVVGFFDTSSGLSDVIIAVYSLRNDEWKRIKNINCRDVFPGCSAFANGKLYYFTKPEYGSDWEILSIDLEKEEYEILQMPSNVKLDDDSCMAVSEG...

XP_057810366.1
MAQSRRTTEIVLPNEVIIEILTWLPVKSLLKFKCVCRSWRALISSQRFIKAHLHNSKLAPNLAHDMLAFACRPGNFRQCSVNSMLYESVSQVSDLSYPFELVENYRVMGTCNGLLLVRLNYTEVILWNPSTRTCKKLPHFGVELAEDDLLGDFGLGYDKSKDDYKVVGFFDTSSGCSAFANGKLYYFTKPEYGSDWEILSIDLEKEEYEILQMPSNVKLDDDSCMAVSEGSLFLLWPHPTFAAADVWMLDGCSVGIKNWT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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