Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G003790`

染色体: Chr05 坐标: 51236297-51240462 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G003790`
名称	SmilChr05G003790
描述	uncharacterized SmilChr05G003790
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	51236297 - 51240462 / `-`

ID 对照

NCBI Gene ID	`LOC131024853`
GeneID	`131024853`
locus_tag	`-`
NCBI Name	`LOC131024853`
原始查询	`SmilChr05G003790`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	phosphatidylinositol-glycan biosynthesis class F-like protein [Source:NCBI gene (formerly Entrezgene);Acc:838175]; symbol=AT1G16040; hit=AT1G16040; species=arabidopsis; confidence=medium
产物	phosphatidylinositol-glycan biosynthesis class F-like protein [Source:NCBI gene (formerly Entrezgene);Acc:838175]; symbol=AT1G16040; hit=AT1G16040; species=arabidopsis; confidence=medium
Arabidopsis	`AT1G16040` (AT1G16040) phosphatidylinositol-glycan biosynthesis class F-like protein [Source:NCBI gene (formerly Entrezgene);Acc:838175] identity=47.7; qcov=0.812; evalue=4.03e-42; confidence=medium
Rice	`Os03g0129000` (PIGF) - identity=55.7; qcov=0.555; evalue=4.06e-34; confidence=medium
GO	GO:0005789 (endoplasmic reticulum membrane); GO:0006506 (GPI anchor biosynthetic process)
KEGG	smil00563 (Glycosylphosphatidylinositol (GPI)-anchor biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF06699 (PIG-F)
InterPro	-
eggNOG	-
NR	GeneID:131024853

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057810375.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057810375.1`
3	Chloroplast	叶绿体	0.60000	`XP_057810383.1`
4	Chloroplast thylakoid	类囊体	0.40000	`XP_057810383.1`
5	Mitochondrion	线粒体	0.20000	`XP_057810383.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:51236970`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B135,C46,C75
`Chr5:51237007`	`G`	`A`	EMS_canonical_SNV	stop_gained	17	A18,A21,B107,B5,B64,B65,C1,C12,C14,C29,C43,C52,C59,C71,C72,C76,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810375.1

232 aa

116

232

PIG-F

PF06699 PIG-F 40-215 aa

XP_057810376.1

232 aa

116

232

PIG-F

PF06699 PIG-F 40-215 aa

XP_057810377.1

232 aa

116

232

PIG-F

PF06699 PIG-F 40-215 aa

XP_057810378.1

232 aa

116

232

PIG-F

PF06699 PIG-F 40-215 aa

XP_057810379.1

232 aa

116

232

PIG-F

PF06699 PIG-F 40-215 aa

XP_057810380.1

232 aa

116

232

PIG-F

PF06699 PIG-F 40-215 aa

XP_057810381.1

232 aa

116

232

PIG-F

PF06699 PIG-F 40-215 aa

XP_057810382.1

220 aa

110

220

PIG-F

PF06699 PIG-F 40-203 aa

XP_057810383.1

191 aa

191

PIG-F

PF06699 PIG-F 40-177 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810375.1`	Pfam	`PF06699`	PIG-F	Family	40	215	2.8e-44	152.2	GPI biosynthesis protein family Pig-F
`XP_057810376.1`	Pfam	`PF06699`	PIG-F	Family	40	215	2.8e-44	152.2	GPI biosynthesis protein family Pig-F
`XP_057810377.1`	Pfam	`PF06699`	PIG-F	Family	40	215	2.8e-44	152.2	GPI biosynthesis protein family Pig-F
`XP_057810378.1`	Pfam	`PF06699`	PIG-F	Family	40	215	2.8e-44	152.2	GPI biosynthesis protein family Pig-F
`XP_057810379.1`	Pfam	`PF06699`	PIG-F	Family	40	215	2.8e-44	152.2	GPI biosynthesis protein family Pig-F
`XP_057810380.1`	Pfam	`PF06699`	PIG-F	Family	40	215	2.8e-44	152.2	GPI biosynthesis protein family Pig-F
`XP_057810381.1`	Pfam	`PF06699`	PIG-F	Family	40	215	8.5e-34	118.0	GPI biosynthesis protein family Pig-F
`XP_057810382.1`	Pfam	`PF06699`	PIG-F	Family	40	203	4.4e-28	99.4	GPI biosynthesis protein family Pig-F
`XP_057810383.1`	Pfam	`PF06699`	PIG-F	Family	40	177	1.5e-18	68.3	GPI biosynthesis protein family Pig-F

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

9 records

下载 cDNA FASTA

XM_057954392.1
AAAAACTCTTAAAATTGAGACACATGAGTATTGAGTAATATTTACACAAGAAAAGCACACAATATTTGACTATTTACACAAAAAATCAGATTCAGTTCAGTAAACAATCCCAGCCGGCCGCACCACCACCTCTCCTCCGCCGCGCCGCCCGTCCCCCTCTCCTCTTCGCCACAGCGAGCCGCTGATCTGCTCGCCGCCGGCCCGCCTCGCCAGAAGAATCCGCAGGTCCGCCGCACCGCCACCTCTCCTCCTCCTGCTCG...

XM_057954398.1
TGAGACACATGAGTATTGAGTAATATTTACACAAGAAAAGCACACAATATTTGACTATTTACACAAAAAATCAGATTCAGTTCAGTAAACAATCCCAGCCGGCCGCACCACCACCTCTCCTCCGCCGCGCCGCCCGTCCCCCTCTCCTCTTCGCCACAGCGAGCCGCTGATCTGCTCGCCGCCGGCCCGCCTCGCCAGAAGAATCCGCAGGTCCGCCGCACCGCCACCTCTCCTCCTCCTGCTCGCCACAGCACCTCAAT...

CDS

9 records

下载 CDS FASTA

LOC131024853
ATGCAACAGCCTCTGCAGGAAGGAAAATCTCCTGAAAGTATAAATGCTACTATTTTGTTTGCTTCTCTGCGGGTGATGCTGCTATTGCATCTCACATGCGGGCTAGGCTTAGCTTTAGCTTTCTGGGTAGCAGTTGAGTTTTGTTCACTTTCGCTCATCCAAAATCCTGCTCCAACTCTTTTTATTGTATGGGCTGTGGATGCTCTAGTTGTGATCCCTGTCTTTAGCCAGTTTCGTCTCAATCCTGATAAATGCTCTTA...

Protein

9 records

下载 Protein FASTA

XP_057810375.1
MQQPLQEGKSPESINATILFASLRVMLLLHLTCGLGLALAFWVAVEFCSLSLIQNPAPTLFIVWAVDALVVIPVFSQFRLNPDKCSYVKAIVRGLMGLPAGALVNALGAIVLGAPVGIQHFKRTVNWSLLMSVFTFVPAASVFGSSWTDWHRIFAHSKPMRPVDFIICLPAHGAIIGAWFGAWPMPLDWERPWQEWPICVTYGAILGYLIGVMASFGFIVYHHKRQHNAKRD

XP_057810376.1
MQQPLQEGKSPESINATILFASLRVMLLLHLTCGLGLALAFWVAVEFCSLSLIQNPAPTLFIVWAVDALVVIPVFSQFRLNPDKCSYVKAIVRGLMGLPAGALVNALGAIVLGAPVGIQHFKRTVNWSLLMSVFTFVPAASVFGSSWTDWHRIFAHSKPMRPVDFIICLPAHGAIIGAWFGAWPMPLDWERPWQEWPICVTYGAILGYLIGVMASFGFIVYHHKRQHNAKRD

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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