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Gene Card

Search by standard ID, NCBI Gene ID, GeneID, locus tag, transcript ID, protein ID, or a manually reviewed literature gene name. The page resolves the query to a Red Sage gene and integrates coordinates, sequences, annotations, subcellular localization, EMS variants, and downloads.
Examples

Resolved gene

SmilChr05G003791

Chromosome: Chr05 Coordinates: 51256272-51259748 Strand: + Biotype: protein_coding

Basic Information

Standard Gene IDSmilChr05G003791
NameSmilChr05G003791
Descriptionprotein ENHANCED DISEASE RESISTANCE 2-like
Chromosome / SeqIDChr05 / NC_080391.1
Coordinates and Strand51256272 - 51259748 / +

ID Mapping

NCBI Gene IDLOC131024856
GeneID131024856
locus_tag-
NCBI NameLOC131024856
Original querySmilChr05G003791

Open ID mapping

Functional Annotation

SourceGFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
Descriptionprotein ENHANCED DISEASE RESISTANCE 2-like
Productprotein ENHANCED DISEASE RESISTANCE 2-like
ArabidopsisAT5G10750 (AT5G10750)
enhanced disease resistance-like protein (DUF1336) [Source:NCBI gene (formerly Entrezgene);Acc:830942]
identity=61.7; qcov=0.889; evalue=3.44e-116; confidence=high
RiceOs08g0152600 (OJ1349_D05.117)
-
identity=42.8; qcov=0.892; evalue=6.54e-76; confidence=medium
GO-
KEGG-
PfamPF07059 (EDR2_C)
InterPro-
eggNOG-
NRGeneID:131024856

Open annotation module

Subcellular Localization Top 5

RankLocationChineseScoreProtein ID
1 Nucleus 细胞核 0.80000 XP_057810385.1
2 Cytoplasm 细胞质 0.80000 XP_057810385.1
3 Cytosol 细胞质基质 0.60000 XP_057810385.1
4 Chromosome 染色体 0.00000 XP_057810385.1
5 Centromere 着丝粒 0.00000 XP_057810385.1

Open subcellular search

EMS Mutant Variants

The table shows the first 12 candidate EMS variants for this gene. Open the EMS module for full filtering and downloads.

Position REF ALT Type Effect Carriers Samples
Chr5:51256799 C T EMS_canonical_SNV CDS_variant 5 A21,B5,C52,C59,C71
Chr5:51256985 C T EMS_canonical_SNV CDS_variant 3 B24,B66,B78
Chr5:51257252 G A EMS_canonical_SNV CDS_variant 4 C14,C29,C72,D2

Open EMS variants

Predicted Protein Domains

Domain results are from the Pfam-A HMM database and HMMER hmmscan; positions are amino-acid coordinates on the corresponding protein sequence.

XP_057810385.1
288 aa
N
1
144
288
EDR2_C
C
PF07059 EDR2_C 48-261 aa
Protein ID Source Domain ID Domain name Type Start aa End aa E-value Score Description
XP_057810385.1 Pfam PF07059 EDR2_C Domain 48 261 3.1e-72 243.6 Protein ENHANCED DISEASE RESISTANCE 2, C-terminal

cDNA / CDS / Protein Sequences

Download genomic DNA (gene region only)

Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.

cDNA

1 records

Download cDNA FASTA
XM_057954402.1
TTTGCAACATGAAAATAATAAGATCCTATTATTAATAGCATTATAATTAATTAGTGAGATAAATTTCCAAAAAAAGAAAAATGAAACGAGAGAGATGAATTTGAATCCTCCCCTACCTCTCTCTACATTCTATTCCTAAAAAGAATTCGAATCAATAAATAAAGAAATAAATGAAAGGCAGTGGCCCTCCCTCCTTATTTAACCGCCCAAAACAGATTCCCCATCTATTTCCTTTTTTTCGACCGTTATTTTCTCTGGCG...

CDS

1 records

Download CDS FASTA
LOC131024856
ATGTGCTCGTCGAAACACATGCAGATGCACCACAACCACCAGCGCTCTTCCACGGCCGCTTCCGCCATGGGAGATTGGAGGGAGGAAGCCATCAACCGCGGATCATTGAAACACGTCGACCTCAACACCGGATCCAACGGCTGGGCCGCGCCTCCGGGCGACCACTTCTCCGTCCGCGGACCTAATTACCCCACCAAAAAGGGCAAAACTCCCGCCGGCGAGTGGCTCCTCGATCCCGCCGGCGTCGATTGGATCCGATC...

Protein

1 records

Download Protein FASTA
XP_057810385.1
MCSSKHMQMHHNHQRSSTAASAMGDWREEAINRGSLKHVDLNTGSNGWAAPPGDHFSVRGPNYPTKKGKTPAGEWLLDPAGVDWIRSNGRLDNLLARRDNRVMNALRASKKSSETFIVAVNLQIPGREHHSVVFYFSSKEGEPISSNPLLNNFVNGSDEYRDSRFKIVNKIVKGPRILKTAVGRYSACLLGKAVSCCYHRGADYLEIDVDIGSSTVASAILRLALGCVKAVTVDLGFLVEGQTEEELPEKLFGAVRICQM...

Flanking Sequence Downloads

Upstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.

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JBrowse

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