Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G003812`

染色体: Chr05 坐标: 51406756-51414878 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G003812`
名称	SmilChr05G003812
描述	probable protein phosphatase 2C 60
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	51406756 - 51414878 / `+`

ID 对照

NCBI Gene ID	`LOC131024877`
GeneID	`131024877`
locus_tag	`-`
NCBI Name	`LOC131024877`
原始查询	`SmilChr05G003812`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable protein phosphatase 2C 60
产物	probable protein phosphatase 2C 60
Arabidopsis	`AT4G31860` (AT4G31860) Protein phosphatase 2C family protein [Source:NCBI gene (formerly Entrezgene);Acc:829315] identity=82.4; qcov=0.941; evalue=0; confidence=high
Rice	`Os02g0180000` (OsPP2C11) - identity=77.9; qcov=0.955; evalue=0; confidence=high
GO	GO:0004722 (protein serine/threonine phosphatase activity); GO:0006470 (protein dephosphorylation); GO:0043169 (cation binding)
KEGG	-
Pfam	PF00481 (PP2C)
InterPro	-
eggNOG	-
NR	GeneID:131024877

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057810408.1`
2	Nucleus	细胞核	0.60000	`XP_057810408.1`
3	Cytoplasm	细胞质	0.60000	`XP_057810408.1`
4	Chromosome	染色体	0.00000	`XP_057810408.1`
5	Centromere	着丝粒	0.00000	`XP_057810408.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:51407795`	`TGG`	`T`	2bp_deletion	frameshift_variant	1	B7
`Chr5:51407795`	`TGG`	`T`	2bp_deletion	CDS_variant	1	B7
`Chr5:51411293`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C62
`Chr5:51411938`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A10,D4
`Chr5:51414417`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C62
`Chr5:51414459`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B44

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810408.1

356 aa

178

356

PP2C

PF00481 PP2C 23-104 aa PF00481 PP2C 153-311 aa

XP_057810409.1

356 aa

178

356

PP2C

PF00481 PP2C 23-104 aa PF00481 PP2C 153-311 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810408.1`	Pfam	`PF00481`	PP2C	Family	23	104	1.8e-75	254.7	Protein phosphatase 2C
`XP_057810408.1`	Pfam	`PF00481`	PP2C	Family	153	311	1.8e-75	254.7	Protein phosphatase 2C
`XP_057810409.1`	Pfam	`PF00481`	PP2C	Family	23	104	1.8e-75	254.7	Protein phosphatase 2C
`XP_057810409.1`	Pfam	`PF00481`	PP2C	Family	153	311	1.8e-75	254.7	Protein phosphatase 2C

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057954425.1
GAAATATCTCTCGTCTTTCCAGAAAAAGAAGGAAAAAGAGAATGGAGAAAGTGGTGTTGGCCCCATAAAGTAAAGTAAAACTGATACGGCACACAGAATTACATTTCACAGTCAACACAAAGTCCAAACTTTTTTAGCTCATTCATTCCCTTTCTTGATCTCCTCTCGTCAACCCCGATTCTATACATTTTTATCCCTAATCCAAATTCCGGAACCGTTGCCTCCTTTCTTTTTTTTTACTTGATTTCGACATCATCAAG...

XM_057954426.1
AAATATCTCTCGTCTTTCCAGAAAAAGAAGGAAAAAGAGAATGGAGAAAGTGGTGTTGGCCCCATAAAGTAAAGTAAAACTGATACGGCACACAGAATTACATTTCACAGTCAACACAAAGTCCAAACTTTTTTAGCTCATTCATTCCCTTTCTTGATCTCCTCTCGTCAACCCCGATTCTATACATTTTTATCCCTAATCCAAATTCCGGAACCGTTGCCTCCTTTCTTTTTTTTTACTTGATTTCGACATCATCAAGA...

CDS

2 records

下载 CDS FASTA

LOC131024877
ATGGGAATATACCTCAGTACTCCTAAAACTGAGAAATTCTCCGAAGATGGTGAAAATGATAAACTTAGGTTTGGTCTGTCCTCCATGCAAGGATGGCGTGCTAATATGGAGGATGCTCATGCTGCAGTTCTGAATTTGGATAACTCCGCATCATTCTTTGGTGTTTACGACGGTCATGGAGGTAAGGTGGTTGCCAAATTCTGTGCTAAGTTCCTGCACCATCAAATACTGAAGCATGAAGCATATTTAGCTGGTGATAT...

Protein

2 records

下载 Protein FASTA

XP_057810408.1
MGIYLSTPKTEKFSEDGENDKLRFGLSSMQGWRANMEDAHAAVLNLDNSASFFGVYDGHGGKVVAKFCAKFLHHQILKHEAYLAGDIGAALQKAFLRMDEMMRGQRGWRELAVLGDKINKFSGMIEGLIWSPRSGDKHDQVDEWTFEEGPHSDFSGPTSGSTACVAVIAEKQLVVANAGDSRCVISRNGQAYNLSRDHKPELEAERERILKAGGFIHAGRVNGSLNLSRAIGDMEFKQNKFLPVEKQIVTADPDVNTVEL...

XP_057810409.1
MGIYLSTPKTEKFSEDGENDKLRFGLSSMQGWRANMEDAHAAVLNLDNSASFFGVYDGHGGKVVAKFCAKFLHHQILKHEAYLAGDIGAALQKAFLRMDEMMRGQRGWRELAVLGDKINKFSGMIEGLIWSPRSGDKHDQVDEWTFEEGPHSDFSGPTSGSTACVAVIAEKQLVVANAGDSRCVISRNGQAYNLSRDHKPELEAERERILKAGGFIHAGRVNGSLNLSRAIGDMEFKQNKFLPVEKQIVTADPDVNTVEL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器