当前解析结果
SmilChr05G003831| 统一新 Gene ID | SmilChr05G003831 |
|---|---|
| 名称 | SmilChr05G003831 |
| 描述 | probable calcium-binding protein CML13 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 51723473 - 51726229 / - |
| NCBI Gene ID | LOC131024989 |
|---|---|
| GeneID | 131024989 |
| locus_tag | - |
| NCBI Name | LOC131024989 |
| 原始查询 | SmilChr05G003831 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable calcium-binding protein CML13 |
| 产物 | probable calcium-binding protein CML13 |
| Arabidopsis | AT1G12310 (AT1G12310)Calcium-binding EF-hand family protein [Source:NCBI gene (formerly Entrezgene);Acc:837785] identity=81.2; qcov=0.993; evalue=4.08e-85; confidence=high |
| Rice | Os08g0117400 (OsCML7)- identity=70.6; qcov=0.986; evalue=2.39e-73; confidence=high |
| GO | GO:0005509 (calcium ion binding); GO:0016460 (myosin II complex) |
| KEGG | smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF13202 (EF-hand_5); PF13405 (EF-hand_6); PF13499 (EF-hand_7) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131024989 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057810570.1 |
| 2 | Cytoskeleton | 细胞骨架 | 0.40000 | XP_057810570.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057810570.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057810570.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057810570.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:51725685 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A2,B48,B51 |
Chr5:51725694 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A2,B17,B48,B51,C3 |
Chr5:51725735 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C30 |
Chr5:51725792 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B44,B47,C56,C65 |
Chr5:51725794 |
CA |
C |
1bp_deletion | frameshift_variant | 3 | A2,C33,C76 |
Chr5:51725794 |
CA |
C |
1bp_deletion | CDS_variant | 3 | A2,C33,C76 |
Chr5:51725830 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr5:51725855 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C86 |
Chr5:51725864 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B130,B136,B33,B86,C29 |
Chr5:51725870 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B130,B136,B33,B86,C29 |
Chr5:51725881 |
G |
A |
EMS_canonical_SNV | stop_gained | 5 | B131,B21,B46,B53,B60 |
Chr5:51725881 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B131,B21,B46,B53,B60 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057810570.1PF13405
EF-hand_6 11-39 aa
PF13202
EF-hand_5 12-34 aa
PF13499
EF-hand_7 80-141 aa
PF13405
EF-hand_6 81-110 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057810570.1 |
Pfam | PF13405 |
EF-hand_6 | Domain | 11 | 39 | 4.9e-18 | 63.8 | EF-hand domain |
XP_057810570.1 |
Pfam | PF13202 |
EF-hand_5 | Domain | 12 | 34 | 2.4e-06 | 27.5 | EF hand |
XP_057810570.1 |
Pfam | PF13499 |
EF-hand_7 | Domain | 80 | 141 | 9.6e-24 | 84.2 | EF-hand domain pair |
XP_057810570.1 |
Pfam | PF13405 |
EF-hand_6 | Domain | 81 | 110 | 4.9e-18 | 63.8 | EF-hand domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。