当前解析结果
SmilChr05G003842| 统一新 Gene ID | SmilChr05G003842 |
|---|---|
| 名称 | SmilChr05G003842 |
| 描述 | uncharacterized SmilChr05G003842 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 51860981 - 51863738 / + |
| NCBI Gene ID | LOC131026100 |
|---|---|
| GeneID | 131026100 |
| locus_tag | - |
| NCBI Name | LOC131026100 |
| 原始查询 | SmilChr05G003842 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0704400; species=rice; confidence=low |
| 产物 | hit=Os06g0704400; species=rice; confidence=low |
| Arabidopsis | AT1G06740 (MUG3)MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3766669] identity=25.2; qcov=0.699; evalue=7.26e-54; confidence=low |
| Rice | Os06g0704400- identity=31.2; qcov=0.776; evalue=8.17e-91; confidence=low |
| GO | GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF00872 (Transposase_mut); PF03108 (DBD_Tnp_Mut); PF04434 (SWIM); PF10551 (MULE) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131026100 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057811856.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057811856.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057811856.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057811856.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057811856.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:51860983 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B107,B137,B51,B63 |
Chr5:51861019 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B117,C17,C61,C80 |
Chr5:51861040 |
TG |
T |
1bp_deletion | frameshift_variant | 2 | A9,B87 |
Chr5:51861040 |
TG |
T |
1bp_deletion | CDS_variant | 2 | A9,B87 |
Chr5:51861063 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A14,B131,B93,C41,C46 |
Chr5:51861105 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B108,B129 |
Chr5:51861106 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B138,B32,B72,C39,C60 |
Chr5:51861144 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B129,B8,B87,C26 |
Chr5:51861173 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B31,B41 |
Chr5:51861237 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B49 |
Chr5:51861239 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B135 |
Chr5:51861289 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B103 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057811856.1PF03108
DBD_Tnp_Mut 173-235 aa
PF10551
MULE 364-459 aa
PF00872
Transposase_mut 381-513 aa
PF04434
SWIM 578-607 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057811856.1 |
Pfam | PF03108 |
DBD_Tnp_Mut | Family | 173 | 235 | 6.8e-06 | 26.4 | MuDR family transposase |
XP_057811856.1 |
Pfam | PF10551 |
MULE | Domain | 364 | 459 | 3.6e-17 | 63.2 | MULE transposase domain |
XP_057811856.1 |
Pfam | PF00872 |
Transposase_mut | Family | 381 | 513 | 6e-06 | 26.1 | Transposase, Mutator family |
XP_057811856.1 |
Pfam | PF04434 |
SWIM | Domain | 578 | 607 | 3.8e-05 | 23.8 | SWIM zinc finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。