Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G003856`

染色体: Chr05 坐标: 52105175-52109258 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G003856`
名称	SmilChr05G003856
描述	potassium channel AKT1-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	52105175 - 52109258 / `+`

ID 对照

NCBI Gene ID	`LOC131024902`
GeneID	`131024902`
locus_tag	`-`
NCBI Name	`LOC131024902`
原始查询	`SmilChr05G003856`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	potassium channel AKT1-like
产物	potassium channel AKT1-like
Arabidopsis	`AT2G26650` (KT1) K+ transporter 1 [Source:NCBI gene (formerly Entrezgene);Acc:817206] identity=56.4; qcov=0.992; evalue=0; confidence=high
Rice	`Os01g0648000` (OsAKT1) - identity=54.1; qcov=0.997; evalue=0; confidence=high
GO	GO:0005249 (voltage-gated potassium channel activity); GO:0005515 (protein binding); GO:0006813 (potassium ion transport); GO:0016020 (membrane); GO:0055085 (transmembrane transport)
KEGG	-
Pfam	PF00023 (Ank); PF00027 (cNMP_binding); PF00520 (Ion_trans); PF07885 (Ion_trans_2); PF11834 (KHA); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13857 (Ank_5)
InterPro	-
eggNOG	-
NR	GeneID:131024902

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057810433.1`
2	Cell projection	细胞突起	0.40000	`XP_057810433.1`
3	Axon	Axon	0.20000	`XP_057810433.1`
4	Dendrite	Dendrite	0.20000	`XP_057810433.1`
5	Nucleus	细胞核	0.00000	`XP_057810433.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:52105492`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B71
`Chr5:52105530`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B15,B63,B86,C29
`Chr5:52106514`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A23,B61,C30,C8
`Chr5:52106605`	`CG`	`C`	1bp_deletion	frameshift_variant	31	B103,B109,B112,B118,B120,B127,B13,B131,B136,B33,B4,B43,B46,B71,B73,B84,B89,B93,B97,C11,C26,C27,C29,C30,C47,C63,C69,C72,C74,C77,C8
`Chr5:52106607`	`AT`	`A`	1bp_deletion	frameshift_variant	30	B103,B109,B112,B118,B120,B127,B13,B136,B33,B4,B43,B46,B71,B73,B84,B89,B93,B97,C11,C26,C27,C29,C30,C47,C63,C69,C72,C74,C77,C8
`Chr5:52106611`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B114
`Chr5:52106628`	`G`	`A`	EMS_canonical_SNV	stop_gained	29	B103,B109,B118,B120,B127,B13,B136,B33,B4,B43,B46,B71,B73,B84,B89,B93,B97,C11,C26,C27,C29,C30,C47,C63,C69,C72,C74,C77,C8
`Chr5:52106650`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B73
`Chr5:52107017`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B2,B66,C85
`Chr5:52107570`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C28,C49
`Chr5:52107589`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C28,C49
`Chr5:52107596`	`TG`	`T`	1bp_deletion	frameshift_variant	2	C28,C49

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810433.1

870 aa

435

870

Ion_trans

Ion_trans_2

cNMP_binding

Ank_4

Ank_2

Ank_5

Ank_3

Ank

Ank_4

Ank_2

Ank

Ank_3

KHA

PF00520 Ion_trans 70-311 aa PF07885 Ion_trans_2 251-306 aa PF00027 cNMP_binding 405-490 aa PF13637 Ank_4 535-584 aa PF12796 Ank_2 536-623 aa PF13857 Ank_5 550-601 aa PF13606 Ank_3 563-592 aa PF00023 Ank 563-594 aa PF13637 Ank_4 633-681 aa PF12796 Ank_2 634-711 aa PF00023 Ank 661-691 aa PF13606 Ank_3 663-688 aa PF11834 KHA 805-868 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810433.1`	Pfam	`PF00520`	Ion_trans	Family	70	311	1.1e-37	130.2	Ion transport protein
`XP_057810433.1`	Pfam	`PF07885`	Ion_trans_2	Family	251	306	6.7e-13	49.0	Ion channel
`XP_057810433.1`	Pfam	`PF00027`	cNMP_binding	Domain	405	490	7.4e-16	58.6	Cyclic nucleotide-binding domain
`XP_057810433.1`	Pfam	`PF13637`	Ank_4	Repeat	535	584	3.9e-21	75.4	Ankyrin repeats (many copies)
`XP_057810433.1`	Pfam	`PF12796`	Ank_2	Repeat	536	623	5.2e-29	101.4	Ankyrin repeats (3 copies)
`XP_057810433.1`	Pfam	`PF13857`	Ank_5	Repeat	550	601	4e-21	75.6	Ankyrin repeats (many copies)
`XP_057810433.1`	Pfam	`PF13606`	Ank_3	Repeat	563	592	1.3e-16	59.5	Ankyrin repeat
`XP_057810433.1`	Pfam	`PF00023`	Ank	Repeat	563	594	3.6e-22	77.9	Ankyrin repeat
`XP_057810433.1`	Pfam	`PF13637`	Ank_4	Repeat	633	681	3.9e-21	75.4	Ankyrin repeats (many copies)
`XP_057810433.1`	Pfam	`PF12796`	Ank_2	Repeat	634	711	5.2e-29	101.4	Ankyrin repeats (3 copies)
`XP_057810433.1`	Pfam	`PF00023`	Ank	Repeat	661	691	3.6e-22	77.9	Ankyrin repeat
`XP_057810433.1`	Pfam	`PF13606`	Ank_3	Repeat	663	688	1.3e-16	59.5	Ankyrin repeat
`XP_057810433.1`	Pfam	`PF11834`	KHA	Family	805	868	5.7e-19	68.6	KHA, dimerisation domain of potassium ion channel

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057954450.1
ATTCAATTCAAGTAAATTCTTTGAGAAAAATTTGTTTACTAATCTTGACCCAAGGAAAATAGAAATTAATGTGCGTCTTAATATAGAGAGCTCCAAAAAAAGCATGATCGACAAACTCTCTTTCTGTTTTCATGCATGCACCGTTGTTTCCATGAGGAAATTAGCTGCAGAATTCGAACGCGACTGAATTTATCAAGAAGCTCTCCATAATCCGAGAGAGTTTGGAAGAGATGGTGCAGGAGAAGATTCGACATAGCTGG...

CDS

1 records

下载 CDS FASTA

LOC131024902
ATGGTGCAGGAGAAGATTCGACATAGCTGGGAGGCGAAGAAGGGATCAATGAGCCGAATTACGGAGATAGAGAGCGAGATCGAAAAGGCGTCGAGAGATGATCGGAGCTGCCACAGCGTCTCCAGCGACATCCTCCCCGCCCTCGGCGTCCACTCCCCTCGAAAGCCCAAGCTCCGCTCCTTTATCATCTCCTCCCTCGACCCACGCTATAGAGTATGGGTGAACTTTCTGATCATACTAGTTTTCTACACAGCGTGGGT...

Protein

1 records

下载 Protein FASTA

XP_057810433.1
MVQEKIRHSWEAKKGSMSRITEIESEIEKASRDDRSCHSVSSDILPALGVHSPRKPKLRSFIISSLDPRYRVWVNFLIILVFYTAWVSPFEFGFNIGYHGPLAITDNVVNGFFAIDIVLTFFVAYLDKTTYLLVDNHKLIALRYAQTWLIFDVISTIPRQLAQKVLPDSYDYVSILRLWRLRRASAMFQRLEKDRNYNYYFVRIAKLTCVVLFEIHCAGCFFYLLADRYPDPTKTWIGSVRENFRQEPLFERYVISMYWS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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