Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G003857`

染色体: Chr05 坐标: 52109582-52114120 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G003857`
名称	SmilChr05G003857
描述	boron transporter 4-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	52109582 - 52114120 / `-`

ID 对照

NCBI Gene ID	`LOC131024911`
GeneID	`131024911`
locus_tag	`-`
NCBI Name	`LOC131024911`
原始查询	`SmilChr05G003857`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	boron transporter 4-like
产物	boron transporter 4-like
Arabidopsis	`AT1G15460` (BOR4) HCO3- transporter family [Source:NCBI gene (formerly Entrezgene);Acc:838116] identity=63.8; qcov=1.01; evalue=0; confidence=high
Rice	`Os01g0175700` (BOR2) - identity=64; qcov=0.998; evalue=0; confidence=high
GO	GO:0005452 (solute:inorganic anion antiporter activity); GO:0005886 (plasma membrane); GO:0006820 (monoatomic anion transport); GO:0050801 (monoatomic ion homeostasis); GO:0055085 (transmembrane transport)
KEGG	-
Pfam	PF00955 (HCO3_cotransp)
InterPro	-
eggNOG	-
NR	GeneID:131024911

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057810450.1`
2	Vacuole membrane	液泡膜	0.20000	`XP_057810450.1`
3	Nucleus	细胞核	0.00000	`XP_057810450.1`
4	Chromosome	染色体	0.00000	`XP_057810450.1`
5	Centromere	着丝粒	0.00000	`XP_057810450.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:52109964`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr5:52109983`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C83
`Chr5:52110119`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C50
`Chr5:52110350`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B131,B37,C36,C43,D2
`Chr5:52110428`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B82
`Chr5:52110437`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B82
`Chr5:52110464`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C41,C48
`Chr5:52110467`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C20
`Chr5:52110492`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr5:52110506`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B112,C59
`Chr5:52110761`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D8
`Chr5:52110768`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A2,B38

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810450.1

663 aa

332

663

HCO3_cotransp

PF00955 HCO3_cotransp 8-179 aa PF00955 HCO3_cotransp 199-374 aa PF00955 HCO3_cotransp 449-591 aa

XP_057810451.1

663 aa

332

663

HCO3_cotransp

PF00955 HCO3_cotransp 8-179 aa PF00955 HCO3_cotransp 199-374 aa PF00955 HCO3_cotransp 449-591 aa

XP_057810452.1

662 aa

331

662

HCO3_cotransp

PF00955 HCO3_cotransp 8-179 aa PF00955 HCO3_cotransp 199-374 aa PF00955 HCO3_cotransp 449-591 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810450.1`	Pfam	`PF00955`	HCO3_cotransp	Domain	8	179	3.6e-93	313.9	HCO3- transporter integral membrane domain
`XP_057810450.1`	Pfam	`PF00955`	HCO3_cotransp	Domain	199	374	3.6e-93	313.9	HCO3- transporter integral membrane domain
`XP_057810450.1`	Pfam	`PF00955`	HCO3_cotransp	Domain	449	591	3.6e-93	313.9	HCO3- transporter integral membrane domain
`XP_057810451.1`	Pfam	`PF00955`	HCO3_cotransp	Domain	8	179	3.6e-93	313.9	HCO3- transporter integral membrane domain
`XP_057810451.1`	Pfam	`PF00955`	HCO3_cotransp	Domain	199	374	3.6e-93	313.9	HCO3- transporter integral membrane domain
`XP_057810451.1`	Pfam	`PF00955`	HCO3_cotransp	Domain	449	591	3.6e-93	313.9	HCO3- transporter integral membrane domain
`XP_057810452.1`	Pfam	`PF00955`	HCO3_cotransp	Domain	8	179	3.6e-93	313.9	HCO3- transporter integral membrane domain
`XP_057810452.1`	Pfam	`PF00955`	HCO3_cotransp	Domain	199	374	3.6e-93	313.9	HCO3- transporter integral membrane domain
`XP_057810452.1`	Pfam	`PF00955`	HCO3_cotransp	Domain	449	591	3.6e-93	313.9	HCO3- transporter integral membrane domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057954468.1
AAAAGAAACAAAGTTTCTCATGTCACATTAATGCATGCATTCGTTTGTTTCTATATCTGTATCTATTTCTTTCTGTATCTTCCTCTCTCTAAATTAAAGCTTCATGCATTGCTGCATTTCTCCTGAATAATATCTGGGAAATAAAGAAAATAGGAGGGGAATTGGAAACGAGCTTAATTACACACAGCAAACTGAGTGTGTGTGTGAGAGCCTGTGAAATGGATAGCCTTAAGACTCCTCTCAAAGGAGTAACCAGAGAT...

XM_057954467.1
AAAGAAACAAAGTTTCTCATGTCACATTAATGCATGCATTCGTTTGTTTCTATATCTGTATCTATTTCTTTCTGTATCTTCCTCTCTCTAAATTAAAGCTTCATGCATTGCTGCATTTCTCCTGAATAATATCTGGGAAATAAAGAAAATAGGAGGGGAATTGGAAACGAGCTTAATTACACACAGCAAACTGAGTGTGTGTGTGAGAGGTAGAGAGAGAGCCTGTGAAATGGATAGCCTTAAGACTCCTCTCAAAGGAG...

CDS

3 records

下载 CDS FASTA

LOC131024911
ATGGATAGCCTTAAGACTCCTCTCAAAGGAGTAACCAGAGATTTCAAAGGAAGGCTTGCATGCTACAAAAAAGATTGGCTCGATTCATGTAGTTCCGGTCCAAGGATTTTGGCTCCAGCAGCATACATTTTCTTCGCTTCTGCTCTCCCTGTAGTCGCCTTTGGGGAGCAATTGAGTCGAGAAACAGACGCGAGCTTGAGCACAGATGAGACTCTCCTGTCTACTGCCATCTGTGGTGTCATCCACTCGATTTTTGGTGG...

Protein

3 records

下载 Protein FASTA

XP_057810450.1
MDSLKTPLKGVTRDFKGRLACYKKDWLDSCSSGPRILAPAAYIFFASALPVVAFGEQLSRETDASLSTDETLLSTAICGVIHSIFGGQPLLILGVAEPTIIMYSYLYSFAKSNIGKELYLAWAAWVCVWTALLLFLLAIFNACTIITRFTRVAGELFGMLISVLFLQEAIKGVVSEFHVPQGEDGGEEQNQFEWLYINGLLSVVFMFGVLITCLKTREARSWRYGTAMMRSFIADYGVPLMVVVWTALSYSAPGRLPSGV...

XP_057810451.1
MDSLKTPLKGVTRDFKGRLACYKKDWLDSCSSGPRILAPAAYIFFASALPVVAFGEQLSRETDASLSTDETLLSTAICGVIHSIFGGQPLLILGVAEPTIIMYSYLYSFAKSNIGKELYLAWAAWVCVWTALLLFLLAIFNACTIITRFTRVAGELFGMLISVLFLQEAIKGVVSEFHVPQGEDGGEEQNQFEWLYINGLLSVVFMFGVLITCLKTREARSWRYGTAMMRSFIADYGVPLMVVVWTALSYSAPGRLPSGV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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