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Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G003858

染色体: Chr05 坐标: 52115112-52122647 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G003858
名称SmilChr05G003858
描述probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向52115112 - 52122647 / -

ID 对照

NCBI Gene IDLOC131024907
GeneID131024907
locus_tag-
NCBI NameLOC131024907
原始查询SmilChr05G003858

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic
产物probable 1-deoxy-D-xylulose-5-phosphate synthase%2C chloroplastic
ArabidopsisAT5G11380 (DXPS3)
1-deoxy-D-xylulose 5-phosphate synthase 3 [Source:NCBI gene (formerly Entrezgene);Acc:831009]
identity=66.9; qcov=1; evalue=0; confidence=high
RiceOs06g0142900 (OsDXS2)
-
identity=64.1; qcov=1.01; evalue=0; confidence=high
GOGO:0008661 (1-deoxy-D-xylulose-5-phosphate synthase activity); GO:0016114 (terpenoid biosynthetic process)
KEGGsmil00730 (Thiamine metabolism - Salvia miltiorrhiza (redroot sage)); smil00900 (Terpenoid backbone biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
PfamPF02779 (Transket_pyr); PF02780 (Transketolase_C); PF13292 (DXP_synthase_N)
InterPro-
eggNOG-
NRGeneID:131024907

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Chloroplast 叶绿体 1.00000 XP_057810442.1
2 Chloroplast stroma 叶绿体基质 1.00000 XP_057810442.1
3 Cytoplasm 细胞质 0.80000 XP_057810443.1
4 Cytosol 细胞质基质 0.80000 XP_057810443.1
5 Nucleus 细胞核 0.00000 XP_057810442.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:52115394 C T EMS_canonical_SNV CDS_variant 2 B140,C86
Chr5:52116063 G A EMS_canonical_SNV CDS_variant 1 C78
Chr5:52116426 C T EMS_canonical_SNV CDS_variant 3 B9,C27,C72
Chr5:52116843 C T EMS_canonical_SNV CDS_variant 1 B14
Chr5:52116890 G A EMS_canonical_SNV stop_gained 4 A19,B69,B83,B95
Chr5:52116890 G A EMS_canonical_SNV CDS_variant 4 A19,B69,B83,B95
Chr5:52116906 G A EMS_canonical_SNV CDS_variant 5 B6,C36,C39,C56,C67
Chr5:52116977 C T EMS_canonical_SNV CDS_variant 1 D11
Chr5:52117066 G A EMS_canonical_SNV CDS_variant 5 B23,B34,C21,D2,D4
Chr5:52117303 C T EMS_canonical_SNV CDS_variant 1 B73
Chr5:52120410 G A EMS_canonical_SNV CDS_variant 5 B38,B39,B70,B82,C78
Chr5:52120619 G A EMS_canonical_SNV CDS_variant 1 A8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810442.1
713 aa
N
1
356
713
DXP_synthase_N
Transket_pyr
Transketolase_C
C
PF13292 DXP_synthase_N 77-358 aa PF02779 Transket_pyr 393-554 aa PF02780 Transketolase_C 571-694 aa
XP_057810443.1
635 aa
N
1
318
635
DXP_synthase_N
Transket_pyr
Transketolase_C
C
PF13292 DXP_synthase_N 2-280 aa PF02779 Transket_pyr 315-476 aa PF02780 Transketolase_C 493-616 aa
XP_057810444.1
635 aa
N
1
318
635
DXP_synthase_N
Transket_pyr
Transketolase_C
C
PF13292 DXP_synthase_N 2-280 aa PF02779 Transket_pyr 315-476 aa PF02780 Transketolase_C 493-616 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057810442.1 Pfam PF13292 DXP_synthase_N Family 77 358 2.5e-72 244.2 1-deoxy-D-xylulose-5-phosphate synthase
XP_057810442.1 Pfam PF02779 Transket_pyr Domain 393 554 5.3e-38 131.1 Transketolase, pyrimidine binding domain
XP_057810442.1 Pfam PF02780 Transketolase_C Domain 571 694 1e-28 100.5 Transketolase, C-terminal domain
XP_057810443.1 Pfam PF13292 DXP_synthase_N Family 2 280 8.7e-72 242.4 1-deoxy-D-xylulose-5-phosphate synthase
XP_057810443.1 Pfam PF02779 Transket_pyr Domain 315 476 4.2e-38 131.4 Transketolase, pyrimidine binding domain
XP_057810443.1 Pfam PF02780 Transketolase_C Domain 493 616 7.7e-29 100.8 Transketolase, C-terminal domain
XP_057810444.1 Pfam PF13292 DXP_synthase_N Family 2 280 8.7e-72 242.4 1-deoxy-D-xylulose-5-phosphate synthase
XP_057810444.1 Pfam PF02779 Transket_pyr Domain 315 476 4.2e-38 131.4 Transketolase, pyrimidine binding domain
XP_057810444.1 Pfam PF02780 Transketolase_C Domain 493 616 7.7e-29 100.8 Transketolase, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057954460.1
ATAATCTAATCTCTAGCTACTGCTCTACAAAAAGAAGAAAATTGCAAATTCTAATCTAATTGGAAAACAGAGGAAAAATTGCATCTTCACAAAAAGAAAAAATTGCAAACTCACTGCGACGAGTCTGCAAGCAGCCGACGGAGTAGACTCTAGCTTCCTCGACTCGGCGCCGGCGGTAGTGCCCAGTCTCTTCGACGCGGTGGCGGTGGTGTGGCCGGATAGCGGGCGGCGGGGAACGGCGCAAGAAGGGTTTGAAATTT...
XM_057954459.1
ATCTTCAACTCCATATCTCAGCATCACGATATCACTCTTGCAAGAAATGCGCACTTTGTCATTTTGCTCACATCGTTGTGTTCATATTCAACAACGACTCTGTAAAAAATTGGAGTGATTCTTTCTCCAGAACTTTCTGGGCTTTTCTGATCGTCTAAATTTGTACAGCAAGAATTTGTTCTTGAACTTTTTGATTGTGTTTGGTGCGAAATTTCTTGCTCTTGCTCAATGGCTGCTTCTTCTTGTCAAAACCCTTTTAG...

CDS

3 records

下载 CDS FASTA
LOC131024907
ATGGCTGCTTCTTCTTGTCAAAACCCTTTTAGGATTAGTGCTAATCTTGTTGGGAGTTCAAGATTTTTGCTTCCGAAAGTAGAATTATCAGTAGTTAATTTCCCTCCAAATGTAGAATTTTCAAGACTCGGTTTTTACCGAAGTTTGACGTGTAAGGAGTATGGCGGTCATGTACATTGCTCATCGAACACTGATGGTGCCGTGAACGAGGAGGCCCTAACACCGATTCTTGATATGGTTGACAATCCCATGAATTTGAA...
LOC131024907
ATGGTTGACAATCCCATGAATTTGAAAAATTTAAGTTTGAAGGAGCTGAAGCAGCTGGCTGATGATATTCGAACAGAATTATCCATCATGTCAAAAACTAACAAATCTTTTCGACCGAGCCTATCCGTGGTAGAACTAGCAGTTGCTATTCATCACGTTTTTCATGCCCCAGTGGACAAGATACTCTGGGATATGGAAGACCAAACATATCCTCACAAGCTTCTCACAGGGAGAAGGGCTTGCCTGAATAAATCAGGGCA...

Protein

3 records

下载 Protein FASTA
XP_057810442.1
MAASSCQNPFRISANLVGSSRFLLPKVELSVVNFPPNVEFSRLGFYRSLTCKEYGGHVHCSSNTDGAVNEEALTPILDMVDNPMNLKNLSLKELKQLADDIRTELSIMSKTNKSFRPSLSVVELAVAIHHVFHAPVDKILWDMEDQTYPHKLLTGRRACLNKSGQVDDLSSYACRNEYDPFGAGHGCSSISSGLGMAVARDIKGKRDRIVSVISNETTMAGQVYEAMSNAGYLDSNMVVILNDRHHSSNPKLDQAPKASI...
XP_057810443.1
MVDNPMNLKNLSLKELKQLADDIRTELSIMSKTNKSFRPSLSVVELAVAIHHVFHAPVDKILWDMEDQTYPHKLLTGRRACLNKSGQVDDLSSYACRNEYDPFGAGHGCSSISSGLGMAVARDIKGKRDRIVSVISNETTMAGQVYEAMSNAGYLDSNMVVILNDRHHSSNPKLDQAPKASINAVSSTLSKLQSSQFFRKFREVAKVLTKRIGRGMHEWAAKIDEYARGMVGPPGSTLFEELGLYYIGPVDGHNIEDLLC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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