Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G003869

染色体: Chr05 坐标: 52276744-52280100 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G003869
名称SmilChr05G003869
描述uncharacterized SmilChr05G003869
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向52276744 - 52280100 / -

ID 对照

NCBI Gene IDLOC131024943
GeneID131024943
locus_tag-
NCBI NameLOC131024943
原始查询SmilChr05G003869

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:817108]; symbol=AT2G25670; hit=AT2G25670; species=arabidopsis; confidence=medium
产物uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:817108]; symbol=AT2G25670; hit=AT2G25670; species=arabidopsis; confidence=medium
ArabidopsisAT2G25670 (AT2G25670)
uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:817108]
identity=57.9; qcov=1.01; evalue=7.74e-43; confidence=medium
RiceOs01g0179300 (BIP128)
-
identity=49.9; qcov=1.06; evalue=1.55e-33; confidence=medium
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131024943

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 1.00000 XP_057810500.1
2 Cytosol 细胞质基质 1.00000 XP_057810500.1
3 Chloroplast 叶绿体 0.20000 XP_057810498.1
4 Nucleus 细胞核 0.00000 XP_057810500.1
5 Chromosome 染色体 0.00000 XP_057810500.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:52277205 G A EMS_canonical_SNV CDS_variant 1 C78
Chr5:52277241 G A EMS_canonical_SNV CDS_variant 1 C51
Chr5:52277323 C T EMS_canonical_SNV CDS_variant 5 A7,C15,C30,C48,C51

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA
XM_057954520.1
CTCTCTCACGTTATCTGCACCACACCTCCGTCTCCATTTCTGAAACCCTCTCTCTCTCTACATTTCTGTCTCTATAGATAAACATCACTGTATGTATATGCAACACCTATACACACATTAAACACACACACAGCGAAAGGATATAGATACGGATATCTTTCTTTCACAAATCGTAACCCTAACACACCTCTCTCATTTCGATTTTTTTTTTTTGTTGTTGTCAATTTGGAACCCTAATTCTCTGTTAGCCTTAGCTTTTT...
XM_057954519.1
CTCTCTCACGTTATCTGCACCACACCTCCGTCTCCATTTCTGAAACCCTCTCTCTCTCTACATTTCTGTCTCTATAGATAAACATCACTGTATGTATATGCAACACCTATACACACATTAAACACACACACAGCGAAAGGATATAGATACGGATATCTTTCTTTCACAAATCGTAACCCTAACACACCTCTCTCATTTCGATTTTTTTTTTTTGTTGTTGTCAATTTGGAACCCTAATTCTCTGTTAGCCTTAGCTTTTT...

CDS

6 records

下载 CDS FASTA
LOC131024943
ATGGTCGGAGGCGGGAATAGAAGGGATGAGGCGTCGTTTACTGTGAGCAACACCAATGTTTTTGCGGCTTTGGAGAGTTTGAGGAAGAAGAAGAAGTCTGACAAAGAGAAGGGGTCCTCCAAGGGGGGCAAGGGCACCTCGAAAGCTGCTGGGAGACAGAATGCCGAAGCAGAGAAGCAGGTGTTCTGGGCTCCGGCACCTTTGACGGTGAAGTCGTGGGCGGATGTTGATGATGAGGATGATGATGATTACTATGCCAC...
LOC131024943
ATGGTCGGAGGCGGGAATAGAAGGGATGAGGCGTCGTTTACTGTGAGCAACACCAATGTTTTTGCGGCTTTGGAGAGTTTGAGGAAGAAGAAGAAGTCTGACAAAGAGAAGGGGTCCTCCAAGGGGGGCAAGGGCACCTCGAAAGCTGCTGGGAGACAGAATGCCGAAGCAGAGAAGCAGGTGTTCTGGGCTCCGGCACCTTTGACGGTGAAGTCGTGGGCGGATGTTGATGATGAGGATGATGATGATTACTATGCCAC...

Protein

6 records

下载 Protein FASTA
XP_057810498.1
MVGGGNRRDEASFTVSNTNVFAALESLRKKKKSDKEKGSSKGGKGTSKAAGRQNAEAEKQVFWAPAPLTVKSWADVDDEDDDDYYATTAPPQAIWGGSGLNAPEETHKPDVVEESESEDELLDEGDDDAEDGHDQEPEVEEQPEPLVTKPAEATSAPKETERQLSKKERRKKELAELEAILADFGVNPKEKAEDEASSGNILPLFNYKFGECPRKSRLIYSMIAEIFSRYALCCSLFFQLDLVLLLYLLFFFWAWRKNRG...
XP_057810499.1
MVGGGNRRDEASFTVSNTNVFAALESLRKKKKSDKEKGSSKGGKGTSKAAGRQNAEAEKQVFWAPAPLTVKSWADVDDEDDDDYYATTAPPQAIWGGSGLNAPEETHKPDVVEESESEDELLDEGDDDAEDGHDQEPEVEEQPEPLVTKPAEATSAPKETERQLSKKERRKKELAELEAILADFGVNPKEKAEDEASSGNILPLFNYKFGECPRKSRLIYSMIAEIFSRYALCCSLFFQLDLVLLLYLLFFFWAWRKNRG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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